Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01417 ATGGAAGCAACAACATCAACTTGCTTCTTCTGTGGTAGAATCCCATCAAAATCCAAACTAGCTTCATCTTCATCATTTGGATCATTTTGTTTATTAACACGAAACAATGTTACTACAATCATGTGCAAAACATCATTAAAAACACACAACCGTGTCGTTCAAAACATCACAAACAGCAATGAAACAAAGGTTCCAAGCACCACAAAAAGAAGAAGAAGAAGAAAAAAAAATGATGCAGCAGCAATAGAAATTCAACTACCCTTTGAGAATATGAACAAGAATCTTCACGTGCATGAGAATATAGGTGACCCTATTGGTTGGAAAGATGTTGGAAAAAGTGTAGTGAGTTGGATACGTGAGAGTATGAAATCCATGGCTTTTGAGATTGCTTCTGCTGAGTTACTTGAAGATTTGGAGTTTTCTGAGATGAAACAAAGAATGGGACCAGGTCTTACGTTTGTTATTCAAGCACAACCTTATTTGAATGCTGTTCCTATGCCACTTGGTCTTGAAGTTACTTGTTTGAAAGCTTGTACTCATTATCCTACTCTTTTTGATCATTTTCAAAGAGAGTTGCGTGATGTTCTTCAAGATATGCAGAGTAAAGGTTTGGTTGAAGATTGGCGTCAAACGCAGTCTTGGAAGTTGCTTAAGGAGCTTGCTAATTCAGCTCAGCACAGGGCAGTTGCAAGGAATGTAACACAGCCAAAGAATGTCCAAGGAGTTTTAGGAATGGATAGAGAAAGAGTCAAAGTGATACAGCAAAGGATTGATGAATTCACCCAAAACATGTCAGAACTTCTCAATATTGAAAGGGATGTTGAATTGGAGTTTACTCAGGAGGAATTAGATGCTGTTCCTAAACAAGATGATGCTTCCGATCCGTCGAAACCGATTGAGTTCTTGGTTAGCCATAGCCAGCCTCAGCAAGAACTATGTGACACCATTTGTAATTTAAATGCCATCAGTACCTCTACAGGATTGGGAGGAATGCATCTGGTGTTATTCAAGATTGAAGGAAACCACCGATTGCCACCTACCACTCTTTCACCCGGAGAAATGGTTTGTGTGAGAACGTGTGACAGCAAGGGTGCAGTTACAACTTCTTGTATGCAAGGAGTTGTGGAAAATCTTGGTGACGATGGCTATAGTATTACCGTTGCTTTAGAGTCACGCCATGGTGATCCTACGTTCTCTAAACTGTTTGGAAAGAATGTGCGCATTGATCGTATTCAAGGATTGGCTGATACACTTACCTATGAGCGAAACTGTGAAGCCCTAATGCTGCTTCAGAAGAATGGTTTACAAAAGAAAAATCCATCAATTTCTGTTGTTGCAACTCTATTTGGCGAAGGGGAAGATGCTGCATGGCTTGAGAAGAATAGTTTGGTAGACTGGAAAGAAGAAAAAACAAATGGAGCATTAGGAAGTGAATCCTTTGATAAATCTCAGCAGAGAGCAATTGCGTTAGGTTTGAATAAGAAGAGGCCACTATTGGTTATCCAAGGACCTCCCGGTACAGGCAAGACCGGTTTACTCAAGCAAATAATAGCATGCGCCGTGGAACAAGGTGAAAGGGTTCTTGTCACAGCACCTACCAATGCAGCTGTTGATAATATGGTTGAAAAGCTATCAAATGTTGGAATAAATATTGTTCGAGTTGGAAATCCCGCTCGTATATCAAAAACAGTAGCATCAAAGTCCTTAGGAGAAATTGTAAATGCGAAGCTTGCAAGTTTTCGCGAAGAGTGTGAGAGGAAGAAATCTGATCTAAGGAAAGATCTAAGACAATGTTTGAGGGATGATTCATTAGCTGCAGGCATACGCCAACTTCTGAAACAGTTGGGAAAGTCGCTAAAGAAAAAGGAAAAGCAGACTATAAATGAAGTTCTATCTAGTGCTCAGGTTGTGCTTGCCACCAATACCGGAGCAGCCGATCCCATGATTCGAAAGCTAAATGCTTTTGACTTGGTTGTCATAGATGAAGCTGGACAGGCAATTGAACCGTCTTGCTGGATTCCTATATTGCAGGCAAAACGCTGCATTCTTGCTGGTGATCAATGCCAACTAGCTCCTGTGATATTTTCTAGAAAGGCATTAGAAGGTGGTTTAGGAATATCGCTACTCGAGAGAGCTGCAACTTTGCATGAAGGGATTCTCACCACTAGATTAACGACACAATACCGTATGAATGATGCCATTGCAAGTTGGGCTTCGAAGGAGATGTATGGAGGATTGTTGAAGTCCTCTAAGACTGTCTTTTCTCATCTTCTTGTAGACTCTCCTTTTGTTAAGCCTACATGGATAACACAGTGCCCTCTACTACTGCTTGACACTCGAATGCCGTACGGAAGTCTATCAATTGGTTGCGAAGAGCATCTAGATCAGGCTGGATCAGGCTCATTGTATAATGAAGGAGAAGCTGATATAGTTTTGCAGCATGTATTTTCCTTGATTTATGCTGGTGTTAGCCCAAATGCTATTGTAGTTCAGTCCCCTTATGTTGCTCAAGTTCAACTTTTGAGGGACATGCTTGACGGGGTTCCTGAAGCTGCCGGTACTGAAGTTTCCACAATTGATAGTTTTCAAGGTCGGGAAGCTGATGCTGTAATTTTATCAATGGTACGATCGAACACATTAGGAGCTGTTGGATTTCTTGGCGATAGCAGAAGAATCAATGTTGCCATTACAAGAGCGCGCAAGCATTTAGCTGTAGTCTGTGACAGCTCAACTATATGCCATAACACGTTCCTAGCAAGACTTATGCGCCATATTCGACACTTTGGTAGGGTGAAGCATGTAGAACCAGATAGTTTTGGAGGAGGGTTTGGACTTGGCATGAATCCAATGTTACCTTCTATGGATTAG 2868 0.4125 MEATTSTCFFCGRIPSKSKLASSSSFGSFCLLTRNNVTTIMCKTSLKTHNRVVQNITNSNETKVPSTTKRRRRRKKNDAAAIEIQLPFENMNKNLHVHENIGDPIGWKDVGKSVVSWIRESMKSMAFEIASAELLEDLEFSEMKQRMGPGLTFVIQAQPYLNAVPMPLGLEVTCLKACTHYPTLFDHFQRELRDVLQDMQSKGLVEDWRQTQSWKLLKELANSAQHRAVARNVTQPKNVQGVLGMDRERVKVIQQRIDEFTQNMSELLNIERDVELEFTQEELDAVPKQDDASDPSKPIEFLVSHSQPQQELCDTICNLNAISTSTGLGGMHLVLFKIEGNHRLPPTTLSPGEMVCVRTCDSKGAVTTSCMQGVVENLGDDGYSITVALESRHGDPTFSKLFGKNVRIDRIQGLADTLTYERNCEALMLLQKNGLQKKNPSISVVATLFGEGEDAAWLEKNSLVDWKEEKTNGALGSESFDKSQQRAIALGLNKKRPLLVIQGPPGTGKTGLLKQIIACAVEQGERVLVTAPTNAAVDNMVEKLSNVGINIVRVGNPARISKTVASKSLGEIVNAKLASFREECERKKSDLRKDLRQCLRDDSLAAGIRQLLKQLGKSLKKKEKQTINEVLSSAQVVLATNTGAADPMIRKLNAFDLVVIDEAGQAIEPSCWIPILQAKRCILAGDQCQLAPVIFSRKALEGGLGISLLERAATLHEGILTTRLTTQYRMNDAIASWASKEMYGGLLKSSKTVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSIGCEEHLDQAGSGSLYNEGEADIVLQHVFSLIYAGVSPNAIVVQSPYVAQVQLLRDMLDGVPEAAGTEVSTIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHLAVVCDSSTICHNTFLARLMRHIRHFGRVKHVEPDSFGGGFGLGMNPMLPSMD 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01417 955 Coils Coil 250 270 - -
Mepo4g01417 955 FunFam DNA helicase A 728 936 - -
Mepo4g01417 955 Gene3D - 728 937 IPR027417 -
Mepo4g01417 955 Pfam AAA domain 480 697 IPR041677 GO:0004386
Mepo4g01417 955 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 917 IPR027417 -
Mepo4g01417 955 CDD DEXXQc_SMUBP2 479 729 - -
Mepo4g01417 955 Pfam AAA domain 706 909 IPR041679 -
Mepo4g01417 955 SMART ultradead3 476 728 IPR014001 -
Mepo4g01417 955 Coils Coil 581 601 - -
Mepo4g01417 955 CDD SF1_C_Upf1 730 926 IPR047187 -
Mepo4g01417 955 Gene3D - 283 414 - -
Mepo4g01417 955 MobiDBLite consensus disorder prediction 57 77 - -
Mepo4g01417 955 FunFam DNA-binding protein SMUBP-2 isoform X2 283 414 - -
Mepo4g01417 955 Gene3D - 266 712 IPR027417 -
Mepo4g01417 955 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 147 936 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01417 Mepo-Chr4 18626146 18631825 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01417 478 669 Core DNA Replication Machinery Family AT1G08840 27.083 5.08e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01417 - - aip:107625008 1489.55