Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01381 ATGGCTGGAATAAGGGAACAAGACCAGTACATGCCAATAGCAAACGTGATTCGTATAATGCGACGGATTCTTCCGTCGCATGCAAAAATCTCCGACGATGCAAAAGAAACAATTCAAGAATGCGTATCCGAATACATAAGTTTCATTACATCAGAAGCAAACGATCGTTGCCAAAGAGAACAAAGGAAAACAGTTACAGCAGAAGATATACTATGGGCAATGGGGAAACTTGGTTTTGATGATTATGTTCATCCTTTAACATTTTACCTTCAACGTTACCGTGAAAGTGAAGGTGAACCTGCTTCTGTTCGACGCACTTCTTCTCTTGCTTTGCCTCCTTCTTTTCCATTAATGCAACAGCATTCTTCATCATTGTCATCAATGCCACTTCCTCTAGTTAATAATAATCATAATAGCAATGGTTATGGTCATAGTTATGGTTTTGATTTTGATCAAGGGTTTTATAGAGATGGTGGTGATGATGCTGCTCCTTCTTCTGCTAGTTTTGTACCAAACTTTGATTATAGTTTTCTTCATCTCAAACGTGATAATCATAATAATAATAATAATAATATGTGA 579 0.3679 MAGIREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITSEANDRCQREQRKTVTAEDILWAMGKLGFDDYVHPLTFYLQRYRESEGEPASVRRTSSLALPPSFPLMQQHSSSLSSMPLPLVNNNHNSNGYGHSYGFDFDQGFYRDGGDDAAPSSASFVPNFDYSFLHLKRDNHNNNNNNM 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01381 192 FunFam Nuclear transcription factor Y subunit B-6 1 111 - -
Mepo4g01381 192 ProSitePatterns NF-YB/HAP3 subunit signature. 41 57 IPR003956 GO:0005634|GO:0006355|GO:0043565
Mepo4g01381 192 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Mepo4g01381 192 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Mepo4g01381 192 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Mepo4g01381 192 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 134 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mepo4g01381 192 Gene3D Histone, subunit A 2 114 IPR009072 GO:0046982
Mepo4g01381 192 SUPERFAMILY Histone-fold 7 104 IPR009072 GO:0046982
Mepo4g01381 192 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01381 Mepo-Chr4 18177809 18178387 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01381 4 99 CCAAT-HAP3 Transcription Factor Family AT5G47670 84.375 5.75e-59 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mepo4g01381 CBFD_NFYB_HMF 1e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01381 K08065 - gmx:100811633 218.779