Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01365 ATGGGGCGTGGAAAGATTGAGATTAAGAAGATTCAAAATAAAACAACAAGGCAAGTAACATTTTCCAAAAGAAGAACTGGATTGTTGAAGAAGACTCATGAGCTATCAGTGCTATGTGAAGCTCAAGTTGGACTAATAATTTTCTCCAGCACTGGAAAACTCTCCCAATATTGCTCTGATTCCACCAGGATGGACCAAATCATTGAAAGGTACGAGAGAAGTACAGGTAAAAGCATTATGGCTGAACATGATGATCATCAGATTCACCCCAGGGAATTAGAAATGTTCCATGACATGGCAATGCTGAGGCAGGAAAGTCTTCGTCTTGAATTGGGAATTCAACGCTATCTTGGAGATGACATGAAGGGTTTACACTTTGATGACTTGACTAAAATTGAACATGAATTAGAAATTTCTCTTGCTAAAGTTCGAAACCGTCAGAATGAGCTCATACAGCAGCAAATGGAGAATCTGCGAAGGAAGGAAAGACTCTTGCAAGATGAAAATATCAATTTATCCAACTGGGAGCACAAGGCACTGATGGAAAACAAGACTGTGATGGATCAGTTTGCATTTTTTGAGGATCAACCTCTTAGTAGGATCCTTCAACTTGCTGCACCTGTTAATCCCTATCTCCAGCTTGCTCAGCCAAATTTTCAAGATTATAATCTCAAGACTAGGGACCTCGATCAGCCATAA 699 0.3991 MGRGKIEIKKIQNKTTRQVTFSKRRTGLLKKTHELSVLCEAQVGLIIFSSTGKLSQYCSDSTRMDQIIERYERSTGKSIMAEHDDHQIHPRELEMFHDMAMLRQESLRLELGIQRYLGDDMKGLHFDDLTKIEHELEISLAKVRNRQNELIQQQMENLRRKERLLQDENINLSNWEHKALMENKTVMDQFAFFEDQPLSRILQLAAPVNPYLQLAQPNFQDYNLKTRDLDQP 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01365 232 Coils Coil 141 178 - -
Mepo4g01365 232 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mepo4g01365 232 Pfam K-box region 93 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo4g01365 232 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Mepo4g01365 232 ProSiteProfiles K-box domain profile. 92 183 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo4g01365 232 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Mepo4g01365 232 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
Mepo4g01365 232 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo4g01365 232 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo4g01365 232 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo4g01365 232 FunFam MADS-box transcription factor MADS-MC 13 87 - -
Mepo4g01365 232 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mepo4g01365 232 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo4g01365 232 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo4g01365 232 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01365 Mepo-Chr4 17960597 17966112 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01365 1 221 MADS-box Gene Family AT5G23260 45.238 6.51e-63 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo4g01365 K-box 1.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01365 - - gmx:100783876 282.337