Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01327 ATGAGCAATGAATCTGAATCCGAAGTGTGTGATAATCCAATTCCATCTCCAAAAATTGGTAAGAGGCAATGTGAGGATGAAGATGAGAAGGAAGTGATTACAAAGAAGCAGAAGATAGACGAGGTTGTTGAAATGAAAGAGATTAAGGAAGAAACTGATTCAGATTATTTGAAAATTGGTGAGGATGAAGATCGGAAGGAAGTGATTACGATGAAAGAGATTAAGGAGGAAATTATTTCAGATGATTCTGAACATGATAAGAAACTTGAAGCTAAAAACGATTCTGCTACTGGTTGCGGTCCCTCAGAATCATTGGATGATGGTATCTCAGATTCTGATTCTCACAGAAGCTCTGGCGAGGATAATCCCGATGATTTGGAGAGTCCAGAGTACATTGGGGAAGAAGTAGTGGAAAAAGTCTCCGAAACGCATCAAGAAAGGCACGAAACCCCAGTCACTGTAAACGAAAAAGATGCTCCATCGAAGACAATATGTGTTAGAAACTTGTCATATAGTGTGGAACGGACTGATATGGAAGACATTTTCAAAGATTGTGGTGAAGTTGTTGATGTTCGTTTCAACACAGATCGCGAAGGGAGGTTTAGAGGCTTTGGATATGTTGAGTTTGGAACAGCAGAAGCAGCAAAAAAAGCCCTTAAATTGGATAGTACAGAATTATTGAACCGTCGCATGAGAGTTGATATAGCTATAGAAAAGAGCGGCTATCCCCCCTGTAGAAGCAACTTGAGCAGCTCAGTCCATACGGGTGGAAATCTTCAGTCTCACCCTCACACTGTAAAGGGTGTTGATGCATCTATTGTAGAAAACAAGCCTAAAAGCCCAGCTACACCAAATGAAACAAATGTTGCATCAAAGACCATATATGTCAGAAATTTGTCATACACTGTGGAACGATCTGATTTGGAAAATATTTTCAAAGATTGTGGAGAAATTGTTGATATTCGTCTCCATACAGACCGCGAAGGGAAATTTAAAGGCCATGCACATGTTCAGTTTGCAACAGCAGATGCAGCACAAAAGGCTCTTGTGTTCAATAAGAAAGTATTTTACAATCGTCTTATGTTCGTTGGTATCGCTTTTGAAAGGGGTATATATTCCCCAAATAGAAGCAATTCGACCTGGAGCAGCTCATTCCATAAGGATGAAAGATTTCAGTCTCAAACTATACCTGTGAAGTGTTCTGATACATCCCTTGCCGAAGACAAGTTGACTTGTGCAAAGGATGTTAAGGATATAGAGATGTCTGATGCTGATGCTGCCTCTGCTGAGAATAAACTTCCTGAAACCCCAGCTACCCAAAAAGAGAAAAATGCTGCATCAAAAACAATATGTGTTAGAAACTTGTCATTCGATGTGCAACGGGCTGAAATTGAAAATATTTTCAAAGATTGTGGAGAAGTTGTTGATGTCCGTGTGCATGTGGATGTTGAGTTTGCAACCGCAGAAGCAGCAGAGAAGGCTCTTGAGTTGGATCACACAAAATTGGCGAACCGTCCCGTCAAAGTAGGTATAGCTCCAGGAGAGGGTGAATGTTTCCCCAATAGGAGCTTGAGCGTCTCATTCCAGAAGGGTGAAAGTTTTCAGCCTCTAACTGTATTTGTGATTGGATTTGATACATTCGTTGCAGAAGAGAAGATAAAAGCTAGCCTGAAAGCACATTTCAGTCCTTGCGGAGAGATTACAAGGATCTCGTTGCCTAGATATCATGATTCTGGTAATATTAAGGGGTTCGCTCATTTGGACTTTAAGGATATTGATGGCTATAGGAAAGCACTACAACTTGATCAAACTGCGATTGGAGATCATTGGCTGTCAGTTGTAAAAGCAAAGCCGAGACGTGATTATCAGGGTTTAGGCAGTGGCAGAGGTGGCTATCACGGTGGATGGGATGGAGGAGACCATGGCGGGAGAGCAGGTTGGGGGAGAAGTCATGGTGCTGGGAGGCACTGGACTTCCAATACCGAGCACTGGTGA 1995 0.419 MSNESESEVCDNPIPSPKIGKRQCEDEDEKEVITKKQKIDEVVEMKEIKEETDSDYLKIGEDEDRKEVITMKEIKEEIISDDSEHDKKLEAKNDSATGCGPSESLDDGISDSDSHRSSGEDNPDDLESPEYIGEEVVEKVSETHQERHETPVTVNEKDAPSKTICVRNLSYSVERTDMEDIFKDCGEVVDVRFNTDREGRFRGFGYVEFGTAEAAKKALKLDSTELLNRRMRVDIAIEKSGYPPCRSNLSSSVHTGGNLQSHPHTVKGVDASIVENKPKSPATPNETNVASKTIYVRNLSYTVERSDLENIFKDCGEIVDIRLHTDREGKFKGHAHVQFATADAAQKALVFNKKVFYNRLMFVGIAFERGIYSPNRSNSTWSSSFHKDERFQSQTIPVKCSDTSLAEDKLTCAKDVKDIEMSDADAASAENKLPETPATQKEKNAASKTICVRNLSFDVQRAEIENIFKDCGEVVDVRVHVDVEFATAEAAEKALELDHTKLANRPVKVGIAPGEGECFPNRSLSVSFQKGESFQPLTVFVIGFDTFVAEEKIKASLKAHFSPCGEITRISLPRYHDSGNIKGFAHLDFKDIDGYRKALQLDQTAIGDHWLSVVKAKPRRDYQGLGSGRGGYHGGWDGGDHGGRAGWGRSHGAGRHWTSNTEHW 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01327 664 SUPERFAMILY RNA-binding domain, RBD 439 526 IPR035979 GO:0003676
Mepo4g01327 664 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 292 368 IPR000504 GO:0003723
Mepo4g01327 664 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 238 IPR000504 GO:0003723
Mepo4g01327 664 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 277 367 - -
Mepo4g01327 664 MobiDBLite consensus disorder prediction 1 34 - -
Mepo4g01327 664 MobiDBLite consensus disorder prediction 643 664 - -
Mepo4g01327 664 SMART rrm1_1 449 510 IPR000504 GO:0003723
Mepo4g01327 664 SMART rrm1_1 293 364 IPR000504 GO:0003723
Mepo4g01327 664 SMART rrm1_1 538 614 IPR000504 GO:0003723
Mepo4g01327 664 SMART rrm1_1 163 234 IPR000504 GO:0003723
Mepo4g01327 664 MobiDBLite consensus disorder prediction 108 123 - -
Mepo4g01327 664 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 537 618 IPR000504 GO:0003723
Mepo4g01327 664 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 448 514 IPR000504 GO:0003723
Mepo4g01327 664 Gene3D - 521 654 IPR012677 -
Mepo4g01327 664 Gene3D - 132 259 IPR012677 -
Mepo4g01327 664 SUPERFAMILY RNA-binding domain, RBD 152 253 IPR035979 GO:0003676
Mepo4g01327 664 MobiDBLite consensus disorder prediction 75 130 - -
Mepo4g01327 664 MobiDBLite consensus disorder prediction 20 34 - -
Mepo4g01327 664 MobiDBLite consensus disorder prediction 75 93 - -
Mepo4g01327 664 SUPERFAMILY RNA-binding domain, RBD 281 379 IPR035979 GO:0003676
Mepo4g01327 664 Gene3D - 260 377 IPR012677 -
Mepo4g01327 664 Gene3D - 396 517 IPR012677 -
Mepo4g01327 664 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 164 231 IPR000504 GO:0003723
Mepo4g01327 664 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 450 508 IPR000504 GO:0003723
Mepo4g01327 664 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 294 359 IPR000504 GO:0003723
Mepo4g01327 664 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 554 609 IPR000504 GO:0003723
Mepo4g01327 664 SUPERFAMILY RNA-binding domain, RBD 535 646 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01327 Mepo-Chr4 17312774 17326765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01327 163 512 Eukaryotic Initiation Factors Gene Family AT4G34110 22.693 2.54e-10 61.6