Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01305 ATGTCGTTTCAAAACATCCCGGATTTTCATAGGATAATATTGCAAGATAAGAAGCTTAGGATTCCCAAGAAGTATGTGGAGAACTTTTGGAAAAGAATTTCAAACCCAATATTCCTTCAATTCCCAAATGGTGTTCAACAAGAAATATTTTGGGTGGAGAGTAATGGTGATATTTGGTTTCAAAAAAATTGGGAAAGTTTTGCAAAGTTTCTGAAGTATGGTTATCTCTTAACTTTTAAATACATATGTGGATCATATTTCAAGGTTAAGATATTTGGTGCAAATACTTTGGAAATAAACTATTCCAACATAAAATCCGTTGAAGAAGTTGTTGAAGCTTCAGAAAAAGCTAAAGAAGGAGTTGAAGTGAGTGGTGATTGTGACAAGAGTTTAGCTCAAAGGACAAGAAAATATGGCAAGAGAAAAAATAGTGTGGATTTGGATACTACCCAGCCAATATTCTCAGGTAGGGACAGTGGAGGCATGATTAAGAAGGCTAAAAATTGCTCAACAGTTGAAGTTGTTAATGAGAAAGACAATAATGAGAATCCCTTTTTTTATGTCACATTGCCACAATCTTACGCCCATGGCTGCAGGATGGTGATACCAAGTGATTTTTCAAGAGCACACTTGAACAAATTTAAAGGGATTGCAAACTTAAGAGTTGGTGAGGACAAGACTATGGAAGTGAATGTGAACTTTGAAGATAATAATAGAAGATCTATTTTGACTATTGGTTGGAAGTCATTTAACCAAAAATATAACTTACAAGTTGGTGATATATGTAAATTTGTGATGACTCAAAGAGAACCACTTTTATTTAGCGTTACTATTACTCCATCAAGGGAGCGACCAAGCTTAAAGAAATTCAAATCGCAAGGTTATAAAGAAGGGACCACTTCTTGTGGTTATAATCCAAAGAGAAAAGGATTTGAAGGAACTTCTAAGAGCTGCCCAACAAATCATCTTGAAAATTCAGAAGTTGATAATGTGAAGAAACCTAAAACATTCAAGATTACTGTGAATTCGAAATACCCGCCGAGTGTTCCAAAGGAGTTTATGAAAAGAGGAAGTCATGAAAACATAGTGGAGTTAAAAATGGGGGAACAATCATGGTTTGTAAAAGTGAATTATTATCATAGTATTCATGGTTGTAGGTTCTCTGCAGGTTGGAGACAATTCATAAAAGAATGCAAAGTGGAGATAGGAGATACTTGCCTCTTTAAGTTGATTGATGAGAGAAAATTTGTGTTTGATGTTTCAATTGTTGGAAAGAACCCCTTCGCTGTTTGTACTATTTAG 1302 0.3472 MSFQNIPDFHRIILQDKKLRIPKKYVENFWKRISNPIFLQFPNGVQQEIFWVESNGDIWFQKNWESFAKFLKYGYLLTFKYICGSYFKVKIFGANTLEINYSNIKSVEEVVEASEKAKEGVEVSGDCDKSLAQRTRKYGKRKNSVDLDTTQPIFSGRDSGGMIKKAKNCSTVEVVNEKDNNENPFFYVTLPQSYAHGCRMVIPSDFSRAHLNKFKGIANLRVGEDKTMEVNVNFEDNNRRSILTIGWKSFNQKYNLQVGDICKFVMTQREPLLFSVTITPSRERPSLKKFKSQGYKEGTTSCGYNPKRKGFEGTSKSCPTNHLENSEVDNVKKPKTFKITVNSKYPPSVPKEFMKRGSHENIVELKMGEQSWFVKVNYYHSIHGCRFSAGWRQFIKECKVEIGDTCLFKLIDERKFVFDVSIVGKNPFAVCTI 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01305 433 CDD B3_DNA 13 92 IPR003340 GO:0003677
Mepo4g01305 433 PANTHER B3 DOMAIN-CONTAINING 329 426 - -
Mepo4g01305 433 ProSiteProfiles B3 DNA-binding domain profile. 349 426 IPR003340 GO:0003677
Mepo4g01305 433 SMART B3_2 185 282 IPR003340 GO:0003677
Mepo4g01305 433 SMART B3_2 336 426 IPR003340 GO:0003677
Mepo4g01305 433 SMART B3_2 9 95 IPR003340 GO:0003677
Mepo4g01305 433 SUPERFAMILY DNA-binding pseudobarrel domain 180 278 IPR015300 -
Mepo4g01305 433 Gene3D - 2 96 IPR015300 -
Mepo4g01305 433 Gene3D - 164 283 IPR015300 -
Mepo4g01305 433 Gene3D - 320 426 IPR015300 -
Mepo4g01305 433 SUPERFAMILY DNA-binding pseudobarrel domain 18 102 IPR015300 -
Mepo4g01305 433 CDD B3_DNA 341 422 IPR003340 GO:0003677
Mepo4g01305 433 SUPERFAMILY DNA-binding pseudobarrel domain 346 420 IPR015300 -
Mepo4g01305 433 ProSiteProfiles B3 DNA-binding domain profile. 185 282 IPR003340 GO:0003677
Mepo4g01305 433 Pfam B3 DNA binding domain 348 421 IPR003340 GO:0003677
Mepo4g01305 433 Pfam B3 DNA binding domain 185 272 IPR003340 GO:0003677
Mepo4g01305 433 CDD B3_DNA 185 278 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01305 Mepo-Chr4 16778636 16781190 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01305 7 277 B3 DNA Binding Superfamily AT3G18990 24.625 3.05e-19 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo4g01305 B3 1.8e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01305 - - mtr:112418291 487.648