Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01302 ATGGCGGTATCGTTGCTCCGATTGCAGTTCAGCCAAGCCAATTCGAGGGTTCCAAAGAAATATGTGGAGAAATATTGGAAAGGAATATCAAACCCTATATTCCTTAAATTTCCAAATGGTGTTCAACAAGAAATATTTTGGGTGGAGAGTAATGGTGACATTTGGTTTCAAAAAAATTGGGAAAGTTTTGCAAAGTTTCTGAAATATGGATATCTCTTAACTTTCAAATTCATTGGTGGATCATATTTTAAGGTTAAGATATTTGGTGCCAATACTTTAGAAATAAATTATGCAAATATCAAATCCGTTGATGAAGGTGCTGAAGACACAGAAGAAGGTATAGAAAGTGATGAATTAGGTGATGATGAAGAAAGTGTTGAAGTCGGTGATGAAAGTTCAGATGAGGTTGAAATACCAAAGCAAGCTCAAAGGACTAGAAATGGCAAGAGAAAATTCTCAGGTAATAACAAAGTATCCATGGTGAAGAAGGCTAAAAAATACCCAATAGCACAATCTGAAGCTGTTAATGAGAATCCTTTTTTTGAAGTTACAATGTCCCATACTTACGCCAATGGCTATTACTTGTGGTTACCATGTGAGTTTTCAAGAAAACACTTGAAATATTTTAATGGAACTGCAACAATAAGGGTTGGTAAAGAAAGGAGTGTGGAAGTGAGTTTGAGGTATTATGATACCAAAGAAAAATCTTGTTTGGGTGGTGGTTGGAAAATATTCAGGGAAAAGTATAATTTGCAAGTTGACAATGTTTGTAAATTTGAGATGATTCAACGGAGACCGTTTTCATTCACTGTTACTATTACTCGTGCTGGAAACGAACCAATCCCAAAGAAATTACTAGAAGATCCTGATGTGATGAAGCATAACACATTCAAGGTTTTGGTGAAGAACACAGCCCCGAGTGTACCAAAGGAGTTTATGAAAAGGGGATATCATGAAAATATTGTGGAGTTAAAAATGGGGAGAAAGTCATGGTTTGTAAAAGTCAATTATTATGAGAGTATTTGTGGCTGCAGATTCAGTAAGGGATGGAGAAAATTTATGAAAGAATGCAAAGTGGAGATTGGAGATACTTGTCTCCTTAAGTTGATTGATGAACGAAAATTTGTGTTTGATGTTTCAATTGCAGGAAAGAATCCATTAGCTGTTTGTTCTCCAAGGTACTAA 1185 0.3544 MAVSLLRLQFSQANSRVPKKYVEKYWKGISNPIFLKFPNGVQQEIFWVESNGDIWFQKNWESFAKFLKYGYLLTFKFIGGSYFKVKIFGANTLEINYANIKSVDEGAEDTEEGIESDELGDDEESVEVGDESSDEVEIPKQAQRTRNGKRKFSGNNKVSMVKKAKKYPIAQSEAVNENPFFEVTMSHTYANGYYLWLPCEFSRKHLKYFNGTATIRVGKERSVEVSLRYYDTKEKSCLGGGWKIFREKYNLQVDNVCKFEMIQRRPFSFTVTITRAGNEPIPKKLLEDPDVMKHNTFKVLVKNTAPSVPKEFMKRGYHENIVELKMGRKSWFVKVNYYESICGCRFSKGWRKFMKECKVEIGDTCLLKLIDERKFVFDVSIAGKNPLAVCSPRY 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01302 394 ProSiteProfiles B3 DNA-binding domain profile. 180 277 IPR003340 GO:0003677
Mepo4g01302 394 Gene3D - 3 92 IPR015300 -
Mepo4g01302 394 SUPERFAMILY DNA-binding pseudobarrel domain 300 380 IPR015300 -
Mepo4g01302 394 MobiDBLite consensus disorder prediction 106 152 - -
Mepo4g01302 394 MobiDBLite consensus disorder prediction 108 132 - -
Mepo4g01302 394 SUPERFAMILY DNA-binding pseudobarrel domain 14 91 IPR015300 -
Mepo4g01302 394 Gene3D - 156 278 IPR015300 -
Mepo4g01302 394 Gene3D - 283 385 IPR015300 -
Mepo4g01302 394 CDD B3_DNA 179 275 IPR003340 GO:0003677
Mepo4g01302 394 CDD B3_DNA 297 381 IPR003340 GO:0003677
Mepo4g01302 394 SUPERFAMILY DNA-binding pseudobarrel domain 177 276 IPR015300 -
Mepo4g01302 394 SMART B3_2 296 385 IPR003340 GO:0003677
Mepo4g01302 394 SMART B3_2 180 277 IPR003340 GO:0003677
Mepo4g01302 394 SMART B3_2 1 91 IPR003340 GO:0003677
Mepo4g01302 394 Pfam B3 DNA binding domain 180 276 IPR003340 GO:0003677
Mepo4g01302 394 Pfam B3 DNA binding domain 306 379 IPR003340 GO:0003677
Mepo4g01302 394 CDD B3_DNA 16 88 IPR003340 GO:0003677
Mepo4g01302 394 PANTHER B3 DOMAIN-CONTAINING 295 383 - -
Mepo4g01302 394 ProSiteProfiles B3 DNA-binding domain profile. 291 385 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01302 Mepo-Chr4 16739347 16743194 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01302 16 288 B3 DNA Binding Superfamily AT3G18990 24.699 6.11e-17 79.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo4g01302 B3 3e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01302 - - mtr:112418296 590.882