Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01300 ATGGTGTCAATCGTTGATAGTGGGCGTGGGAGTGAAGCTAAGGGAATCCATTTCTATCTAACTATTCAACTTCGTCACTTGCATGATGCAGACCTTATGATTCCAAGGAATTTTGTAGAGAGATATTGGAAAGATGTATCAAATCCAATATCTCTAAAATTTCCAAATAAGTCTCAGTGTAAAATGAATTGGGAACAACGTGGTGATGATATTTGGCTTCTGAATTGGAAAAGATTTGCACGATCGCTTAGATGTGGAGATCTTTTAGTTTTTCAATACAAAGGAGGGTCAGATTTTCATGTCATTATATTAGATGATAGTAAATTAGTAATTGACTATTCAAGTATTAGATGCAACGACGATGAAGAAAATAATAAAGAGAGCGATGATGATGGTGATCATAATGATGATTATGATGTTGAGATTCCCCGTGACAGTGAAAATACTAAAATCTCCATCAACTTAAATGACATTGCTACTGCTGCTGCTACATCTCAAGGGAAAAACATTAACAAGAGAAAATTTAATATCAATGCAACCCAGCAAAAAGTTTCAGGCAATTTTGCAGAGGCTAATAGAAACAGAGGAGGCAGGGAGAAGAAAGCTAAGGAATGCACCAAAACTAAAGATGGGAATGAGAGAAGTTGCACAAATTCTCATCCCAATGAGAATCCTAGCTTCACTCTCAAATTATCGCGATATTATTATGGAGGTGATAGATTGAATATACCTATTTGGTTTTCAAAAGAATACATGAATGAGTTATTGCAAGGGAAGGCAACAATTAGAAGTGTTGGTGAGGACAGGGCATGGTACGTGACATTAAAATTTGATAAAAGCAAGAGCAGTTTTGTAATGCAGGTTGGTTGGAAGTCATTTTCAAAGGAACATGAGTTGAAAGTTGGTGATGTATGTAAATTTGAGATGATTCAACGTGAACCACTGTCATTCACAATTACTATTATCCCAGGCCCAGCCACAAAGGAACCATGCCCAGAGCAGTTTCAAGATTCTGTAAGTCCGAATTCACATGACAAATTCAAGGTTTTTGTGACATCATTAGACAAGCTGGTTGTACTGCCAAGTCTGTTGAAGAAACATAATATATTTAGCGGAGATTCAGTGGAGTTGAAAGTAGGGGAAGGAGCATGGTTTGTAGAGGTGAGTTATAATCAATACCTCGATTATGGATGGTTCACTAAAGGTTGGCCAGAATTTGTGAGAGAATGCAATGTGAAGATTGGAGACACTTGTTTGTTTGAGATGATTGATGTTCAAAATCATGTTTTCAAGGTTTCAATTATTCTAGATGTTTAG 1317 0.366 MVSIVDSGRGSEAKGIHFYLTIQLRHLHDADLMIPRNFVERYWKDVSNPISLKFPNKSQCKMNWEQRGDDIWLLNWKRFARSLRCGDLLVFQYKGGSDFHVIILDDSKLVIDYSSIRCNDDEENNKESDDDGDHNDDYDVEIPRDSENTKISINLNDIATAAATSQGKNINKRKFNINATQQKVSGNFAEANRNRGGREKKAKECTKTKDGNERSCTNSHPNENPSFTLKLSRYYYGGDRLNIPIWFSKEYMNELLQGKATIRSVGEDRAWYVTLKFDKSKSSFVMQVGWKSFSKEHELKVGDVCKFEMIQREPLSFTITIIPGPATKEPCPEQFQDSVSPNSHDKFKVFVTSLDKLVVLPSLLKKHNIFSGDSVELKVGEGAWFVEVSYNQYLDYGWFTKGWPEFVRECNVKIGDTCLFEMIDVQNHVFKVSIILDV 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01300 438 CDD B3_DNA 225 323 IPR003340 GO:0003677
Mepo4g01300 438 SUPERFAMILY DNA-binding pseudobarrel domain 222 322 IPR015300 -
Mepo4g01300 438 ProSiteProfiles B3 DNA-binding domain profile. 226 325 IPR003340 GO:0003677
Mepo4g01300 438 MobiDBLite consensus disorder prediction 193 216 - -
Mepo4g01300 438 ProSiteProfiles B3 DNA-binding domain profile. 384 438 IPR003340 GO:0003677
Mepo4g01300 438 Pfam B3 DNA binding domain 229 322 IPR003340 GO:0003677
Mepo4g01300 438 Pfam B3 DNA binding domain 351 433 IPR003340 GO:0003677
Mepo4g01300 438 SMART B3_2 226 325 IPR003340 GO:0003677
Mepo4g01300 438 SMART B3_2 19 107 IPR003340 GO:0003677
Mepo4g01300 438 SMART B3_2 346 433 IPR003340 GO:0003677
Mepo4g01300 438 Gene3D - 11 108 IPR015300 -
Mepo4g01300 438 SUPERFAMILY DNA-binding pseudobarrel domain 15 105 IPR015300 -
Mepo4g01300 438 CDD B3_DNA 347 435 IPR003340 GO:0003677
Mepo4g01300 438 Gene3D - 205 324 IPR015300 -
Mepo4g01300 438 Gene3D - 332 437 IPR015300 -
Mepo4g01300 438 MobiDBLite consensus disorder prediction 121 141 - -
Mepo4g01300 438 MobiDBLite consensus disorder prediction 189 221 - -
Mepo4g01300 438 PANTHER B3 DOMAIN-CONTAINING 344 435 - -
Mepo4g01300 438 SUPERFAMILY DNA-binding pseudobarrel domain 350 435 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01300 Mepo-Chr4 16717082 16720136 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01300 18 320 B3 DNA Binding Superfamily AT3G18990 22.823 1.37e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo4g01300 B3 2.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01300 - - tpra:123913547 567