Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01298 ATGAGGGCTGGTTGGAAGTCATTTTCAAAGGAACATGAGTTGAAAGTTGGTGATGTATGTAAATTTGAGATGACTCAACGCGAACCACTTTCATTCACAATTATTATTATCCCAACCACAAAGGAACCATGCCCGGAGCAGTTTCAAGAGGCTAATGAAAACAGAGGAGGCAGGGATAAGAAATGCACAAAAACTAAAGATGGGAATGAGAGAAACTGCACAAATTCTCATCCCAATGAGAACCCTAGCTTCACTCTCATATTATTGCCATATCATGTTGAAGGTGATAATAGATTGACGATACCTAATTGGTTTTCGAAAGAATACATGAATGAGTTATTGCAAGGGAAGGCAACAATTAGAAGTGTTGGTGAGGAGGATAGAACATGGCACGTGACGTTAAACTTTGATGAATCCAGAATAAGTTTTCGAATGGGAAGTGGTTGGAAGTCATTTTCACGGGAACATAACTTGCAAGTCGGTGACATGTGTACGTTTGAGATGACTCGACGCAAACCACTTTCATTCACGATTGCTATCATCTCAACCACAAAGGAACCAAGCCCGGAGAAGTTTCAAGATTCTGTAAGTCTGAATTTACATGAGATGTTTAAGGTTTTTATAACATCATCAGACAAGCTGGTTGTACTACCAAGTGAGCTGTTGAAGATGCATGGTATATTTAGTGGAAATTCAGTGGAGTTGAGAGTAGGGGAAGGAACATGGTTTGTAGATGTGAGTTATAGTGAACATCTCGACTATGGTTGGTTCACCAAAGGCTGGCAAGAATTTGTGAGAGATTGCAAAGTAAAGACTGGAGACACTTGCTTGTTTGAGACGATTGATGTGCAAAATCATGTGTTCAAGGTTTCAATTGTTTGA 882 0.3968 MRAGWKSFSKEHELKVGDVCKFEMTQREPLSFTIIIIPTTKEPCPEQFQEANENRGGRDKKCTKTKDGNERNCTNSHPNENPSFTLILLPYHVEGDNRLTIPNWFSKEYMNELLQGKATIRSVGEEDRTWHVTLNFDESRISFRMGSGWKSFSREHNLQVGDMCTFEMTRRKPLSFTIAIISTTKEPSPEKFQDSVSLNLHEMFKVFITSSDKLVVLPSELLKMHGIFSGNSVELRVGEGTWFVDVSYSEHLDYGWFTKGWQEFVRDCKVKTGDTCLFETIDVQNHVFKVSIV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01298 293 Gene3D - 1 41 IPR015300 -
Mepo4g01298 293 Gene3D - 62 186 IPR015300 -
Mepo4g01298 293 Gene3D - 188 293 IPR015300 -
Mepo4g01298 293 SMART B3_2 84 184 IPR003340 GO:0003677
Mepo4g01298 293 SMART B3_2 203 291 IPR003340 GO:0003677
Mepo4g01298 293 ProSiteProfiles B3 DNA-binding domain profile. 1 40 IPR003340 GO:0003677
Mepo4g01298 293 ProSiteProfiles B3 DNA-binding domain profile. 84 184 IPR003340 GO:0003677
Mepo4g01298 293 SUPERFAMILY DNA-binding pseudobarrel domain 203 292 IPR015300 -
Mepo4g01298 293 MobiDBLite consensus disorder prediction 49 77 - -
Mepo4g01298 293 SUPERFAMILY DNA-binding pseudobarrel domain 2 36 IPR015300 -
Mepo4g01298 293 CDD B3_DNA 82 182 IPR003340 GO:0003677
Mepo4g01298 293 ProSiteProfiles B3 DNA-binding domain profile. 200 293 IPR003340 GO:0003677
Mepo4g01298 293 Pfam B3 DNA binding domain 84 182 IPR003340 GO:0003677
Mepo4g01298 293 Pfam B3 DNA binding domain 210 289 IPR003340 GO:0003677
Mepo4g01298 293 SUPERFAMILY DNA-binding pseudobarrel domain 79 183 IPR015300 -
Mepo4g01298 293 CDD B3_DNA 203 292 IPR003340 GO:0003677
Mepo4g01298 293 PANTHER B3 DOMAIN-CONTAINING PROTEIN REM-LIKE 3-RELATED 82 290 IPR039218 -
Mepo4g01298 293 MobiDBLite consensus disorder prediction 52 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01298 Mepo-Chr4 16693023 16697394 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01298 45 168 REM Transcription Factor Family AT2G24690 28.571 7.01e-06 45.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo4g01298 B3 1.7e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01298 - - tpra:123923263 330.487