Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01295 ATGACTAGCAAAAGGGGAAATAAGCATACTTTCTCTGCTTCTACTATTCGTTTCTTTAGAGTTATTACCACACCAATTCTTCAAGATGGAAAACTTATGATACCAAAAGGTTTCACTAGGGACCATATGAGTGACATGTCAAACCCAATGTTTCTCAAGACTCCAGATGGCAAAAAATGGGAAATGAGTACGACTAAAATCAATGGGGATTTATGGTTTCAAAAGGGTTGGAAAGAATTTGCTACACATTATTCACTAGATCATGGGCACATGATATTATTTCAATATGAAGAAAACTCTCATTTTGTGGTGCATATATTTTCCAAGAGTACCCTTGAGATTGAATATCCTTTCCATGACAATCAACATGAACAAAACAACTTTGACCAACAAAGTAGTGATGACGACTCGATTGAAATTTTTGATAAGTCACCTTCATGCAACAAGAAGACTAGACCAAAATCACCAATTATGTGTCCTCAACCACATAAGAAATTGAGAAGTAACTCAAGTGAAGGTGTTGGAACAAGCTCGAGATTCCAAAACTTGCCTAAGCATCATGTCCAATCTAGTGAGGATACGGGTGCTAGCGCTGAATTCCGAAAAGTAAAGCACGAGCTAGAACAAGAACAAGACAAAGAGCAATACCAAGAGCAGGAGCAGTTAAATAGAGTTAGAAGCTTCAAATCAAATAATCCTTCTTTCAGGATTACCATGAAGTCTTCACATATTTATAGCCATTCCTTGTATGTCCCATCACAATTTGCTAACAATCATATGAAGAAAGAGCAAAGTGATATTCTTCTTCAACTCTTGGATGGGAGAGTTTGGGATGCTAAATACTGTTCTGGAAAAATTAAAGGTGGATGGAAGAAATTTGTAACACACAACAAGTTGAAAATTGGGGATGTGTGTATTTTTGAACTAACCAAAAGCCAATACCTTACTTTGAAAGTAATAATATTTAGACTTGAGGAAGATCCACACTCCCCTCCACCTCAAGAATCAGTTCAAAGAGACAAAGACTTCTCTGATGTTGAAAGTGAAACTATTCTGACAAATAAAGGAGAGAAGGCAACCGAAAAAACTTCATTGCGGACAAAGGCTGAATTCTTTACGAATGAAGCTGAGAATGAAGCTGATAAATTCAACTCCAAATATCCATTTTTCAGGGTCAATATTATGCCAAATCAACGAGGGCATTCTAGATTGCATGTACCAAATTCCTTCATTACAAATTACTTGGATAACAAGGAACAAACAGTGATGTTAAAGTTTGGGAAGAAATTGTGGCCTGTAAAGTTGCATTGTTATTCCAACATGAAATCAGGCCAGTTTTGTAGAGGTTGGAAGCTATTTTGGGAAGAAAATAAATTGAAAGGTGGAGATGCATGTGTCTTTGAGCTCATCAAGAGGGAAGATGTTGTGCTTAATGTTCATATTTTCAGAGGCAATTGA 1458 0.3656 MTSKRGNKHTFSASTIRFFRVITTPILQDGKLMIPKGFTRDHMSDMSNPMFLKTPDGKKWEMSTTKINGDLWFQKGWKEFATHYSLDHGHMILFQYEENSHFVVHIFSKSTLEIEYPFHDNQHEQNNFDQQSSDDDSIEIFDKSPSCNKKTRPKSPIMCPQPHKKLRSNSSEGVGTSSRFQNLPKHHVQSSEDTGASAEFRKVKHELEQEQDKEQYQEQEQLNRVRSFKSNNPSFRITMKSSHIYSHSLYVPSQFANNHMKKEQSDILLQLLDGRVWDAKYCSGKIKGGWKKFVTHNKLKIGDVCIFELTKSQYLTLKVIIFRLEEDPHSPPPQESVQRDKDFSDVESETILTNKGEKATEKTSLRTKAEFFTNEAENEADKFNSKYPFFRVNIMPNQRGHSRLHVPNSFITNYLDNKEQTVMLKFGKKLWPVKLHCYSNMKSGQFCRGWKLFWEENKLKGGDACVFELIKREDVVLNVHIFRGN 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01295 485 SMART B3_2 235 325 IPR003340 GO:0003677
Mepo4g01295 485 SMART B3_2 18 110 IPR003340 GO:0003677
Mepo4g01295 485 SMART B3_2 389 485 IPR003340 GO:0003677
Mepo4g01295 485 ProSiteProfiles B3 DNA-binding domain profile. 389 485 IPR003340 GO:0003677
Mepo4g01295 485 MobiDBLite consensus disorder prediction 164 196 - -
Mepo4g01295 485 CDD B3_DNA 233 323 IPR003340 GO:0003677
Mepo4g01295 485 ProSiteProfiles B3 DNA-binding domain profile. 234 325 IPR003340 GO:0003677
Mepo4g01295 485 CDD B3_DNA 17 108 IPR003340 GO:0003677
Mepo4g01295 485 MobiDBLite consensus disorder prediction 123 197 - -
Mepo4g01295 485 SUPERFAMILY DNA-binding pseudobarrel domain 383 483 IPR015300 -
Mepo4g01295 485 Pfam B3 DNA binding domain 389 484 IPR003340 GO:0003677
Mepo4g01295 485 Pfam B3 DNA binding domain 237 323 IPR003340 GO:0003677
Mepo4g01295 485 Pfam B3 DNA binding domain 23 109 IPR003340 GO:0003677
Mepo4g01295 485 Gene3D - 214 326 IPR015300 -
Mepo4g01295 485 Gene3D - 370 485 IPR015300 -
Mepo4g01295 485 Gene3D - 11 111 IPR015300 -
Mepo4g01295 485 SUPERFAMILY DNA-binding pseudobarrel domain 14 110 IPR015300 -
Mepo4g01295 485 MobiDBLite consensus disorder prediction 204 223 - -
Mepo4g01295 485 MobiDBLite consensus disorder prediction 204 220 - -
Mepo4g01295 485 PANTHER B3 DOMAIN-CONTAINING 228 479 - -
Mepo4g01295 485 SUPERFAMILY DNA-binding pseudobarrel domain 228 324 IPR015300 -
Mepo4g01295 485 CDD B3_DNA 388 483 IPR003340 GO:0003677
Mepo4g01295 485 ProSiteProfiles B3 DNA-binding domain profile. 17 110 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01295 Mepo-Chr4 16661124 16663847 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01295 233 485 B3 DNA Binding Superfamily AT3G18990 24.706 1.45e-17 82.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo4g01295 B3 1.6e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01295 - - mtr:25482710 790.03