Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01290 ATGAAACCCGAGTTATACGAAATCTCCGACGATGAATGGGAGAATCACTCTTTCAAACCCTCACGTGTTTTAAAACGACCTCGTTCTCCTCCTCCGCCTCTCGAATCTTTCTATTATAAACCACCGCAACCACCTCCTTCTTCGTCTGTAACCGTTTCCGACGACGACGATTGCGTTGAAATACCGCGAAATACCGATAATATCCTTGATGAATTGGATGATGCTGAATGTGATGCGGCGGCTGCTGCTCCGGCGGCGAAACCTGGACGGAGGTTTATTATAGATGATGAGGATGAAGAGGATGGAGATGGAGGTAGTGGTGGTGGTGTGGATTTGTATGAGATTGATTCTACTGAAGATGAAATTGAGGACGCCATTGAAGATGCAAATGAAGATGATTTGGTTGGTAAAGCTTTGCAGAAGTGTGCCAGGATTTCGGTTGAGTTGAAAGGGGAGTTGTTTGGTTCTTCTGGTGCGGTTTGTGATAGGTATTCGGAAGTTGAATCTTCTTCGGTTAGAATTGTTACTCAGGATGATGTTGATGTTGCTTGTGGTTCTGAGGATTCGGATTTTCAACCGTTGTTAAAGCCGTATCAGCTTGTTGGTGTTAATTTCTTGCTGTTGTTGTATCGGAAGAGGATTGGAGGAGCCATATTGGCAGATGAAATGGGCCTTGGCAAAACGGTTCAGGCAATCACATATTTGACTTTGTTGAATCACTTGCACAACGATTCTGGTCCACATCTTATAGTCTGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAAGTGGTGCCCGTCCTTTTCTGTTCTTCAATATCACGGGTCTGCACGCGCAGCGTACTGCAAGGAGTTGAATTCCTTGTCCAAGTCAGGATTGCCTCCTCCATTTAATGTTCTTCTTGTCTGTTATTCACTTTTCGAACGACACAGTGCACAGCAGAAAGATGATCGTAAAATCCTGAAGCGTTGGAAGTGGAGCTGTGTGCTGATGGACGAGGCACATGCTTTGAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCTCGAAATGCGAACCAACGCTTGATGCTGACAGGGACGCCTCTTCAAAATGATCTACATGAGTTATGGTCTATGTTGGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGATGTTGACTTAAAAAAGTTACTTAGTGCAGAAGATAAAGATTTAACTAGTCGTATGAAGTCTATATTAGGGCCATTTATTTTACGGCGCCTGAAATCTGATGTGATGCAGCAACTTGTTCGAAAAACACAGAAGGTTCAATATGTTGTAATGGAAAAGCAACAGGAACATGCTTACAAGGAAGCCATCGAGGAGTATCGTGCTGTTTCACAAGCTCGGTTAACAAAATGTTCTGATCTGAACTCAAAAAATGTTCTTGAAGTTCTACCTCGACGGCAAATAAATAATTATTTTGTTCAGTTCCGCAAGATTGCGAACCATCCCTTGTTGATAAGGCGAATTTATAATGATGAGGATGTTGTTCGCTTTGCTAGGAAGCTACATCCAATAGGTGCTTTTGGCTTTGAATGTACTTTGGACAGAGTTATAGAGGAGCTTAAAAGTTACAATGACTTCTCCATTCACCGGCTTTTACTAAATTATGGTACCAATGATAGAAAGGGGATCCTTTCAGATAAACATGTTATGCTTTCTGCAAAATGTCGGGCTTTAGCGGAACTTCTTCCATCCCTAAAGAAGGGTGGTCACCGTGTTTTGATCTTTAGTCAATGGACATCAATGCTTGATATATTGGAGTGGGCTTTGGATGTCATTGGGTTGACCTACAAACGGCTTGATGGAAGCACACAGGTAGCAGAGAGGCAAACAATAGTCGACACATTCAATAATGATACTTCAATATTTGCATGCTTGCTTTCAACTAGAGCTGGTGGACAAGGCTTAAACTTAACTGGAGCTGATACGGTTGTGATTCATGACATGGATTTTAACCCACAGATTGATAGACAAGCAGAAGATCGTTGCCATCGAATTGGTCAAACAAAGCCTGTAACCATATACAGGCTGGTGACAAAGGGAACAGTTGATGAAAATGTGTATGAGATTGCAAAGAGAAAGCTAGGATTAGATGCTGCTGTTCTAGAATCCATGGAAGAGATCAAAGAAGGGGACATGCCTGAGAAGACGATGGGAGAGATATTGTCTGCAATTTTGTTAAATTATTGA 2238 0.42 MKPELYEISDDEWENHSFKPSRVLKRPRSPPPPLESFYYKPPQPPPSSSVTVSDDDDCVEIPRNTDNILDELDDAECDAAAAAPAAKPGRRFIIDDEDEEDGDGGSGGGVDLYEIDSTEDEIEDAIEDANEDDLVGKALQKCARISVELKGELFGSSGAVCDRYSEVESSSVRIVTQDDVDVACGSEDSDFQPLLKPYQLVGVNFLLLLYRKRIGGAILADEMGLGKTVQAITYLTLLNHLHNDSGPHLIVCPASVLENWERELKKWCPSFSVLQYHGSARAAYCKELNSLSKSGLPPPFNVLLVCYSLFERHSAQQKDDRKILKRWKWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSMLEFMMPDIFASEDVDLKKLLSAEDKDLTSRMKSILGPFILRRLKSDVMQQLVRKTQKVQYVVMEKQQEHAYKEAIEEYRAVSQARLTKCSDLNSKNVLEVLPRRQINNYFVQFRKIANHPLLIRRIYNDEDVVRFARKLHPIGAFGFECTLDRVIEELKSYNDFSIHRLLLNYGTNDRKGILSDKHVMLSAKCRALAELLPSLKKGGHRVLIFSQWTSMLDILEWALDVIGLTYKRLDGSTQVAERQTIVDTFNNDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLGLDAAVLESMEEIKEGDMPEKTMGEILSAILLNY 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01290 745 MobiDBLite consensus disorder prediction 25 48 - -
Mepo4g01290 745 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 574 741 IPR001650 -
Mepo4g01290 745 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 208 386 IPR014001 -
Mepo4g01290 745 SMART helicmild6 600 683 IPR001650 -
Mepo4g01290 745 CDD DEXHc_Snf 195 388 - -
Mepo4g01290 745 MobiDBLite consensus disorder prediction 1 56 - -
Mepo4g01290 745 MobiDBLite consensus disorder prediction 1 21 - -
Mepo4g01290 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 725 IPR027417 -
Mepo4g01290 745 Pfam SNF2-related domain 213 501 IPR000330 GO:0005524|GO:0140658
Mepo4g01290 745 Gene3D - 555 739 IPR027417 -
Mepo4g01290 745 FunFam Protein CHROMATIN REMODELING 19 isoform A 166 444 - -
Mepo4g01290 745 Pfam Helicase conserved C-terminal domain 571 683 IPR001650 -
Mepo4g01290 745 Gene3D - 195 430 IPR038718 -
Mepo4g01290 745 SMART ultradead3 191 396 IPR014001 -
Mepo4g01290 745 Gene3D - 431 507 IPR027417 -
Mepo4g01290 745 CDD SF2_C_SNF 561 694 - -
Mepo4g01290 745 MobiDBLite consensus disorder prediction 86 111 - -
Mepo4g01290 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 421 IPR027417 -
Mepo4g01290 745 PANTHER SNF2/RAD54 HELICASE FAMILY 130 720 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01290 Mepo-Chr4 16585127 16595297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01290 216 734 RAD5 or RAD16-like Gene Family AT5G22750 26.019 5.98e-46 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo4g01290 SNF2_N 7.2e-57 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01290 K14439 - gmx:100806323 1221.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g01290 4 16585127 16595297 Mepo4g01290 4 16585127 16595297 ECH