Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01289 ATGGCTGCTGCTTCATCATCTACACCTTTCTTGGAAATCAGACAAGAAAATCAAAGTCAGATTACTCAACAACATCAATCTTCCACAGATGCTTCATCAACTGCTGCTCAACCTTTAGTTCCTCAGAAAAAAAGAAGAAATCAACCTGGAACACCATATCCAGATGCAGAGGTGATAGCACTATCTCCAAAGACCCTAATGGCAACAAACAGATTTGTATGTGAAGTGTGTCAAAAAGGGTTTCAAAGGGAGCAAAATTTGCAACTACATAGAAGAGGACACAATTTGCCTTGGAAGCTAAAGCAAAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATTTGTGTCCAGAACCAACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGTGACCTCACTGGAATTAAGAAGCACTTTTCTAGAAAGCATGGTGAGAAAAAGTGGAAATGTGAAAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGTACTAGGGAGTATAGATGTGACTGTGGTACTCTCTTCTCAAGGCGTGACAGTTTCATCACTCATAGGGCATTTTGTGATGCACTAGCACATGAAAATGCAAGACACCCTTCCAACATGAACCCTTTGGCAACTCATCTATTTTCCACAAATCACATGAGTTTAGGACTATCCCAGATAAGCACTCAACAAGGAGCCACAAACAATAACATATTAAGCCTAGGTAACATTCCTTGTACACCAAAATATGAACATCATTTAATCTCACCTTTACATCAATCATCATCATCATCATTTGGTCAACAACAACAACAATCACAACAACATCAACAACAACAATCAATGTCTTCCTCACCTTTCTTCATCACTGATCCAAATCAAACTTTCCAACAAGACCTTCATCAAGGACAATTCTCAAACAAACAACTTCATCTTCATCATGGTCTCATGCAACTTCCTGATCTTCAAGGAAATACCAATAACAACACAACTTCTTCGTCGGTATCGCCTTTTAACCTAAGCTTCTTTCCAAATACCAATGGTAACAACACAATGCATGATCAATTCAACAACATAAGTGAATCTCATCATCCTCATCAACATGAAGGTTTTTCTTCACTCTTTGGTAATTCATCAATGCAACAAGAGAACATGTTGTCTTCGCCACACATGTCGGCTACTGCATTGCTTCAAAAAGCTGCTCAAATTGGTTCAACAACAACAACTATCAACAACAACAATGGTGTAGAATCTGATGAACAACATCTACATGGATTGATGAACTCTCTTGGGAATGGAAACACTTCAATATATGATAACAATAACCTTGGTCAGTTTCACAATGTTGAGGAGGAGAATAAAAAGATGTCTTCGTCACAACACAGTCTAGTTGGTAATTTGTGCTTTGGAGGATCAGATAAATTGACTTTGGATTTTCTTGGTGTTGGAGGAATGGTGAGAAATATGAATAGTACAAGTGGTGGAGGATTTTCACAAAGAGAGCAGCAACTACACTCCATGAGTGCAATGAACAACATGGATCCTAAATTGGAATCAACACAAGGAAATCAACCTTTTTGA 1590 0.383 MAAASSSTPFLEIRQENQSQITQQHQSSTDASSTAAQPLVPQKKRRNQPGTPYPDAEVIALSPKTLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHENARHPSNMNPLATHLFSTNHMSLGLSQISTQQGATNNNILSLGNIPCTPKYEHHLISPLHQSSSSSFGQQQQQSQQHQQQQSMSSSPFFITDPNQTFQQDLHQGQFSNKQLHLHHGLMQLPDLQGNTNNNTTSSSVSPFNLSFFPNTNGNNTMHDQFNNISESHHPHQHEGFSSLFGNSSMQQENMLSSPHMSATALLQKAAQIGSTTTTINNNNGVESDEQHLHGLMNSLGNGNTSIYDNNNLGQFHNVEEENKKMSSSQHSLVGNLCFGGSDKLTLDFLGVGGMVRNMNSTSGGGFSQREQQLHSMSAMNNMDPKLESTQGNQPF 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01289 529 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
Mepo4g01289 529 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Mepo4g01289 529 MobiDBLite consensus disorder prediction 1 41 - -
Mepo4g01289 529 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 503 IPR031140 -
Mepo4g01289 529 MobiDBLite consensus disorder prediction 1 56 - -
Mepo4g01289 529 Gene3D Classic Zinc Finger 126 205 - -
Mepo4g01289 529 MobiDBLite consensus disorder prediction 261 295 - -
Mepo4g01289 529 SMART c2h2final6 148 168 IPR013087 -
Mepo4g01289 529 SMART c2h2final6 72 94 IPR013087 -
Mepo4g01289 529 SMART c2h2final6 113 143 IPR013087 -
Mepo4g01289 529 FunFam protein indeterminate-domain 12-like 51 119 - -
Mepo4g01289 529 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
Mepo4g01289 529 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Mepo4g01289 529 Pfam Zinc finger, C2H2 type 72 94 IPR013087 -
Mepo4g01289 529 Gene3D Classic Zinc Finger 55 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01289 Mepo-Chr4 16569708 16574456 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01289 42 500 IDZ Gene Family AT2G02070 47.297 5.88e-124 374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo4g01289 zf-C2H2 0.005 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01289 K25870 - gmx:100806198 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g01289 4 16569708 16574456 Mepo4g01289 4 16569708 16574456 ECH