Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01287 ATGGCAGCATCATTTTCAGCTGCGTCTTTCTTTACAATCACAGAAGAGGATCAGAATCAGAATCAGATGAATCAACAGAATTCATCAACACCTTCATCATCAACAACTCCAACTGCACCACCTCAGAAGAAAAGGAGAAACCAACCTGGAACACCAAATCCAGATGCAGAAGTGATAGCACTATCTCCCAAGAGCCTAATGGCAACAAACAGATTTGTATGTGAAGTGTGCCAAAAAGGGTTCCAAAGGGAGCAAAATTTACAACTACATAGAAGAGGACACAATTTGCCTTGGAAGCTAAAGCAAAAGAGTAACAAAGAGCCAAAAAGAAAGGTTTATTTGTGTCCAGAACCAACATGTGTTCACCATGACCCTTCAAGGGCTCTTGGCGACCTCACTGGAATTAAGAAACACTATTTTAGAAAGCATGGTGAGAAAAAATGGAAGTGTGAAAAGTGTTCTAAGAAGTATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAGACTTGTGGTACCAAGGAGTATAGATGTGACTGTGGCACTCTCTTCTCCAGAAGAGACAGTTTCATCACACATAGGGCCTTTTGTGATGCACTTGCTCAAGAAAGTTCAAGACAACCACAATCAAACCTAATCACCAACACTTCTCTTAATAACTCTCAACTATTTCGAAATATTAGTAACAACATGTCCTTAGCCTTATCTCAAATTCCTCAACAACACATGTCTTCCATCCATGGCCAAAACGACAACAACCAAACTAGTGAAATCTTGCGTTTTGGCAACACAAGAACTTCACAATTCAACAATATTCTATCCCCACCCCCACAACAAACTCTTCAAACCCCTCCATTTAATTTCATCACACAACAAAACCAAAATTACCATCATGACCAATCACAACCACAACCGTTCCAAGGATTAATATCATTGTCCGAACTCAACAACAACACCATGTTTTCTGAAAATTTCAACAATGAAGGGTCAAATGATTTCTTCTCTGAAAATTCTATAATGTTTGATCATAATAACCAAACAAACCCGATCTCTCCTCACATGTCAGCAACAGCTTTGCTTCAAAAAGCTTCTCAAATGGGTGCAACTTCAAGCACCACCACCACCAACAATACTTCTTCTTCAATACTAAGAAGCTTTGGTCATGTTTCTTCTTCTGCAACAACAAAGGTTAATGGTGGTGGTGATGGACTCACTAGAGATTTTCTTGGAGTTGGTCAAATTGTTATGAGAAACATGAATGGAGGAGTTGGTCAAAGAAGTCAACGTAACTTCAACTTGGAAGCAGAGAATAATGGAAATATTGGTGGTGGAGAGAACTTTGAGTGA 1344 0.3921 MAASFSAASFFTITEEDQNQNQMNQQNSSTPSSSTTPTAPPQKKRRNQPGTPNPDAEVIALSPKSLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYFRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCDALAQESSRQPQSNLITNTSLNNSQLFRNISNNMSLALSQIPQQHMSSIHGQNDNNQTSEILRFGNTRTSQFNNILSPPPQQTLQTPPFNFITQQNQNYHHDQSQPQPFQGLISLSELNNNTMFSENFNNEGSNDFFSENSIMFDHNNQTNPISPHMSATALLQKASQMGATSSTTTTNNTSSSILRSFGHVSSSATTKVNGGGDGLTRDFLGVGQIVMRNMNGGVGQRSQRNFNLEAENNGNIGGGENFE 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01287 447 SMART c2h2final6 113 143 IPR013087 -
Mepo4g01287 447 SMART c2h2final6 148 168 IPR013087 -
Mepo4g01287 447 SMART c2h2final6 72 94 IPR013087 -
Mepo4g01287 447 MobiDBLite consensus disorder prediction 1 49 - -
Mepo4g01287 447 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 94 IPR013087 -
Mepo4g01287 447 FunFam protein indeterminate-domain 5, chloroplastic-like 126 205 - -
Mepo4g01287 447 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 20 421 IPR031140 -
Mepo4g01287 447 Pfam Zinc-finger double-stranded RNA-binding 72 94 IPR022755 -
Mepo4g01287 447 FunFam protein indeterminate-domain 12-like 51 119 - -
Mepo4g01287 447 ProSitePatterns Zinc finger C2H2 type domain signature. 74 94 IPR013087 -
Mepo4g01287 447 Gene3D Classic Zinc Finger 53 120 - -
Mepo4g01287 447 MobiDBLite consensus disorder prediction 1 57 - -
Mepo4g01287 447 SUPERFAMILY beta-beta-alpha zinc fingers 71 168 IPR036236 -
Mepo4g01287 447 Gene3D Classic Zinc Finger 126 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01287 Mepo-Chr4 16543874 16549349 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01287 329 423 IDZ Gene Family AT2G02070 38.686 5.21e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo4g01287 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01287 K25870 - gmx:100807789 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g01287 4 16543874 16549349 Mepo4g01287 4 16543874 16549349 ECH