Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01281 ATGGAAAAAGTAGCTCCTCCTCTTCTTCCTCTTCATCCTCCTATGTTATCATCACATCAATTTTACGATTCATCAAACACCAAAAAACGTGATCTATTATCATCATACGACGTCGTTCACATCCCAAACAACGATAATTGGAACCCTAAAGAATGGAATTGGGACAGTATCCGTTTCATGACAGCAAAATCAACAGTAGAACTACAACAGACCGAACAATCTCTAAACTTAAATCTCGGCAGTTGTCCGGGACTCGTACGAGGAAACAAACGAATCCGTTCAGGATCTCCAACATCGGCTTCATATCCGATGTGTCAAGTTGATAACTGCAAAGAAGATCTATCAAAAGCGAAGGATTATCATCGTCGTCATAAGGTGTGTGAAGCTCATAGTAAAGCTTCTAAGGCTTTGTTAGGGAATCAAATGCAACGCTTTTGTCAGCAGTGTAGTAGGTTTCATCCGTTGCTGGAGTTTGATGAAGGGAAACGGAGTTGTAGACGGAGACTTGCTGGTCATAATCGCCGTCGGAGAAAAACCCAGCCGGATGAAGTGGCGGTTGGAGGTTCGCCCCCGTTGAATCAGGTTGCTGCTAATTTGGAGATTTTTAACTTGTTGACTGCTATTGCTGATGGTTCTCAAGGAAAATTTGAGGAAAGAAGGTCACAAGTTCCAGATAAAGAGCAGCTTGTACAGATTCTGAATAGGATCCCTTTACCTGCTGATCTTACTGCAAAGTTGCTGGATGTTGGTAATAATTTGAATGCGAAAAATGATAATGTCCAAATGCAAACTTCACCCTCCTATCATCATCGCGATGATCAACCAAACAATCCCCCCCCTGCCCCGTTAACTAAGGATTTTCTTGCTGTTCTTTCCACAACTCCATCCACACCTGCTCAAAATGGCGGCAGCGGGTCCACAAGTAGTGCCGATCATCTGAGAGAGAGAAGCAGTGGCAGTTCTCAGTCTCCAAATGATGATTCAGATTGCCAGGAGGATGTTCGAGTTAAATTGCCGCTGCAACTTTTTGGCTCCTCTCCAGAAAACGACAGCCCATCGAAATTGCCATCTTCACGAAAGTATTTTTCATCGGCAAGTAGTAATCCTGTTGATGAAAGGTCGCCGTCGTCATCTCCTCCTGTTGTGGAGATGAATTTTGGTTTGCAAGGTGGGATTAGAGGACTCAATTCTAATGGTATTTTGACTGGACTTGGAGGCAATGCAAATAAGGAAACTAGCCAAAGTCATAGTTGTACTACTATCCCTCTTGATCTCTTTAAAGGTTCAAAATCAAATAACATGATTCAACAATCTTGTTCAGTTCAAAGTGTTCCATTTAAAGCTGGTTATGCATCTTCAGGCTCTGATTATTCACCTCCCAGTTTGAATTCAGATACTCAGGATCGTACTGGGAGAATAATGTTTAAATTGTTTGACAAGCATCCTAGCCATTTCCCAGGAACGCTGCGAACACAGATTTACAATTGGCTTTCTACACGACCATCAGACTTGGAGAGTTACATAAGGCCCGGCTGTGTTGTCCTATCAATTTATGCTTCAATGTCTTCTGCTGCTTGGGTGCAATTAGAAGAAAACTTCCTCCAACGTGTTGATTCTTTAATTCATAACTCAGATTCTGATTTCTGGAGAAATGGAAGATTTCTTGTTTATTCTGGCAGTCAGTTAGCATCACACAAAGATGGAAGGATACGCATGTGCAAACCATGGGGAACATGGAGGTCTCCAGAGTTGATATCAGTGTCTCCTTTGGCAATTGTCGGTGGACAGGAGACTTCTATTTCATTGAAGGGAAGAAACCTGTCTGCTCCTGGCACAAAGATTCATTGCACTGGTGCTGACTGTTATACATCGTCAGAAGTTATAGGATCAGGAGATCCTGGTATGGTCTATGATGAGATAAAATTGAGTGGTTTTGAAGTTCAGAATACATCTCCTAGTGTTCTAGGTCGCTGTTTCATTGAGGTAGAAAATGGTTTCAAGGGAAACAGTTTTCCAGTGATAATAGCCAATGCATCCATTTGCAAGGAGTTGAGACCGCTTGAGTCTGAATTTGACGAGGAGGAAAAAATGTGTGATGCCATTTCAGAGGAGCATGAACATCATTTTGGGAGGCCCAAGTCAAGGGATGAGGCTTTGCACTTTTTGAATGAGCTTGGTTGGCTGTTTCAAAGGGAAAGGTTCTCGAATGTGCACGAGGTTCCAGATTATTCGCTCGACAGGTTCAAATTTGTACTGACGTTTTCTGTGGAAAGAAACTGTTGCATGTTGGTCAAAACGCTTTTGGATATGCTGGTTGATAAACACTTCGAAGGAGAAGGGTTGTCAACAGGGTCAGCGGAGATGCTGAAAGCAATCCAACTTCTAAACAGAGCAGTGAAAAGAAAGTGCACAAGCATGGTTGATTTGCTCATTAACTATTCTATAACTAGCAAAAATGGCACATCCAATAAATATGTATTTCCACCGAATCTTGAGGGCCCTGGTGGTATTACTCCCTTGCATTTGGCAGCATCTACAACGGATTCTGAGGGTGTAATTGACTCTTTAACAAATGATCCACAGGAGATTGGGTTGAAGTGCTGGGAAACCCTTGTGGATGAAAACGGGCAGACTCCACATGCCTATGCCATTATGAGAAATAATCACTCTTATAATATGTTGGTTGCCCGTAAACGTTCCGATAGACAAAGAAGTGAAGTTTCAGTTAGAATTGATAATGAGATAGAGCAACCATCACTGGGAATTGAGCTAATGCAAAAGCGAATTAACCAAGTCAAACGAGTTGGGGACTCCTGTTCCAAGTGTGCAATTGCAGAAGTTCGCGCCAAAAGAAGATTTTCCGGTTCACGGAGCTGGCTTCACGGTCCCTTTATTCATTCGATGCTAGCTGTTGCTGCTGTTTGTGTATGTGTTTGTGTGTTATTCCGTGGAACCCCTTATGTAGGCTCAGTTTCTCCCTTCAGGTGGGAAAACTTGAATTATGGCACGATGTAA 3015 0.4259 MEKVAPPLLPLHPPMLSSHQFYDSSNTKKRDLLSSYDVVHIPNNDNWNPKEWNWDSIRFMTAKSTVELQQTEQSLNLNLGSCPGLVRGNKRIRSGSPTSASYPMCQVDNCKEDLSKAKDYHRRHKVCEAHSKASKALLGNQMQRFCQQCSRFHPLLEFDEGKRSCRRRLAGHNRRRRKTQPDEVAVGGSPPLNQVAANLEIFNLLTAIADGSQGKFEERRSQVPDKEQLVQILNRIPLPADLTAKLLDVGNNLNAKNDNVQMQTSPSYHHRDDQPNNPPPAPLTKDFLAVLSTTPSTPAQNGGSGSTSSADHLRERSSGSSQSPNDDSDCQEDVRVKLPLQLFGSSPENDSPSKLPSSRKYFSSASSNPVDERSPSSSPPVVEMNFGLQGGIRGLNSNGILTGLGGNANKETSQSHSCTTIPLDLFKGSKSNNMIQQSCSVQSVPFKAGYASSGSDYSPPSLNSDTQDRTGRIMFKLFDKHPSHFPGTLRTQIYNWLSTRPSDLESYIRPGCVVLSIYASMSSAAWVQLEENFLQRVDSLIHNSDSDFWRNGRFLVYSGSQLASHKDGRIRMCKPWGTWRSPELISVSPLAIVGGQETSISLKGRNLSAPGTKIHCTGADCYTSSEVIGSGDPGMVYDEIKLSGFEVQNTSPSVLGRCFIEVENGFKGNSFPVIIANASICKELRPLESEFDEEEKMCDAISEEHEHHFGRPKSRDEALHFLNELGWLFQRERFSNVHEVPDYSLDRFKFVLTFSVERNCCMLVKTLLDMLVDKHFEGEGLSTGSAEMLKAIQLLNRAVKRKCTSMVDLLINYSITSKNGTSNKYVFPPNLEGPGGITPLHLAASTTDSEGVIDSLTNDPQEIGLKCWETLVDENGQTPHAYAIMRNNHSYNMLVARKRSDRQRSEVSVRIDNEIEQPSLGIELMQKRINQVKRVGDSCSKCAIAEVRAKRRFSGSRSWLHGPFIHSMLAVAAVCVCVCVLFRGTPYVGSVSPFRWENLNYGTM 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01281 1004 ProSiteProfiles Zinc finger SBP-type profile. 102 179 IPR004333 GO:0003677
Mepo4g01281 1004 Pfam SBP domain 105 178 IPR004333 GO:0003677
Mepo4g01281 1004 SUPERFAMILY Ankyrin repeat 792 889 IPR036770 -
Mepo4g01281 1004 MobiDBLite consensus disorder prediction 255 272 - -
Mepo4g01281 1004 MobiDBLite consensus disorder prediction 289 327 - -
Mepo4g01281 1004 FunFam Squamosa promoter-binding-like protein 14 96 166 - -
Mepo4g01281 1004 MobiDBLite consensus disorder prediction 344 382 - -
Mepo4g01281 1004 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 65 793 IPR044817 GO:0003677
Mepo4g01281 1004 MobiDBLite consensus disorder prediction 171 190 - -
Mepo4g01281 1004 MobiDBLite consensus disorder prediction 255 382 - -
Mepo4g01281 1004 Gene3D - 95 166 IPR036893 GO:0003677|GO:0005634
Mepo4g01281 1004 Gene3D - 749 933 IPR036770 -
Mepo4g01281 1004 SUPERFAMILY SBT domain 103 184 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01281 Mepo-Chr4 16452357 16458493 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01281 16 1004 SBP-box Gene Family AT1G20980 49.906 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Mepo4g01281 SBP 2.6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01281 - - gmx:100819004 1380.16