Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01278 ATGGCGGAACACTTAGCATCAATCTTCGGCACAGAAAAAGACAGAGTAAATTGCCCTTTCTACTTCAAGATCGGCGCGTGTCGTCACGGCGACCGTTGCTCTCGTCTCCACAACCGTCCCACAATCTCCCCAACTCTCCTCCTCTCCAACATGTACCAACGTCCCGACATCATCACCCCCGGCGTCGATCCAAACGGTCAACCAATCGATCCGCGTCAGATCCAACAACACTTTGAAGATTTCTACGAAGATATCTTCACTGAGCTTTCAAAATTCGGTTACGTTGAAACGTTGAATGTTTGTGATAATTTGGCTGATCATATGATTGGTAATGTTTATGTGCTTTTTAAAGAGGAAGATCATGCTGCTGCTGCGTTAGCGAGTTTGAGAGGGAGGTTTTATGAAGGGAGGCCGATTTTGGCGGATTTTTCTCCGGTTACGGATTTTCGTGAGGCGACTTGTCGACAGTATGAGGAGAATAGCTGTAATCGTGGTGGTTATTGTAATTTTATGCATGTTAAGAAGATTGGTAGGGAGTTGAGGAGGAAATTGTTTTCTTCGCAGCGGAGCAGGAGCCGGAGCAGGAGTAATAGTCCGAGGCGGAGAAGGAGAAGCAGAAGCAGAGAACGAGAGAGACCGCGTGATAGAGACTATGATTCGCGTGGAAGACGGAGTAGTGATAGGGATAGGGTTAGGGATGGAGATAGGGATAGGGAGAGGAAAAGAGATAGTAGGGATAGGGATGGTGGGAGGAGAAATGGGAGGGAGGCAAGGGAAGGAAGCGAGGAAAGGCGAGCGAGGATTGAGCAATGGAATAGGGAAAAAGAGGAGAAGCCGTGA 840 0.4821 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDIITPGVDPNGQPIDPRQIQQHFEDFYEDIFTELSKFGYVETLNVCDNLADHMIGNVYVLFKEEDHAAAALASLRGRFYEGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKKIGRELRRKLFSSQRSRSRSRSNSPRRRRRSRSRERERPRDRDYDSRGRRSSDRDRVRDGDRDRERKRDSRDRDGGRRNGREAREGSEERRARIEQWNREKEEKP 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01278 279 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 269 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mepo4g01278 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 83 139 IPR000504 GO:0003723
Mepo4g01278 279 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mepo4g01278 279 PRINTS U2 auxiliary factor small subunit signature 75 90 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mepo4g01278 279 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mepo4g01278 279 PRINTS U2 auxiliary factor small subunit signature 165 177 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mepo4g01278 279 PRINTS U2 auxiliary factor small subunit signature 130 154 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mepo4g01278 279 PRINTS U2 auxiliary factor small subunit signature 103 125 IPR009145 GO:0000398|GO:0003723|GO:0089701
Mepo4g01278 279 SUPERFAMILY RNA-binding domain, RBD 77 149 IPR035979 GO:0003676
Mepo4g01278 279 ProSiteProfiles Zinc finger C3H1-type profile. 148 175 IPR000571 GO:0046872
Mepo4g01278 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 146 IPR000504 GO:0003723
Mepo4g01278 279 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 38 IPR000571 GO:0046872
Mepo4g01278 279 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 150 173 IPR000571 GO:0046872
Mepo4g01278 279 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Mepo4g01278 279 MobiDBLite consensus disorder prediction 210 279 - -
Mepo4g01278 279 FunFam Splicing factor U2AF small subunit 45 145 - -
Mepo4g01278 279 SMART c3hfinal6 148 174 IPR000571 GO:0046872
Mepo4g01278 279 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Mepo4g01278 279 MobiDBLite consensus disorder prediction 194 209 - -
Mepo4g01278 279 MobiDBLite consensus disorder prediction 184 279 - -
Mepo4g01278 279 Gene3D - 43 145 IPR012677 -
Mepo4g01278 279 CDD RRM_U2AF35B 44 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01278 Mepo-Chr4 16394209 16397462 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mepo4g01278 RRM_1 0.00024 CL0221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01278 K12836 - ath:AT5G42820 352.443