Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01255 ATGCCTCCTCGTCCTTCTTTTCACAAGCTCATTCTCCCTTCATCCCTTCAAACTAGACAATTGAGGATTCCAGATAATTTTCTTAGGAAATATGGGGCCCAGCTTTCGACTATTGCAACCCTCACTGTTCCTGATGGCACTGTCTGGCGTCTAGGATTGAAAAAGGTTGACAACCGAATTTGGTTTGTCGATGGCTGGCAAGATTTTGTTCAACGTTACTCCATTGGCATTGGATACTTTCTAGTATTCACTTATGAAGGAAATTCAAATTTCATTGTTCATATCTTTAATATGAGTACTGCTGAGTTAAACTATCAATCAGCCATGAGAAGCCGTACTGAAGGGCCTTGCTATGCAAATTATCATCCTATTTTTGAAGACATCGAAGATATAGACTCCTTTGAATTCCTGGATTCATCACCTTCAAACCTTACTCCTGGTGCATTGCAAGACAAGGTTTTTAGTGGATCTTTGGATCAACTGACACCAGCGAAGAATCATACTCCATCATTGCAGAATTTGTTTAATGGGGGTTCTAAACTCAACCACGTTAATTGGGGAGATATCGGTGGTACTCTTTCTTCAAAGAGTGCCATTCAGTCAACCAGAGATATAGGTGTTCAGTTCAATGCCAATGAGTTTAAGAAGTCTACTGAAGGATTGAAATTGCGCTATCCTAATGAGGAAGGGGTTAATAATACTGATACTAAGAAAACTTCAAGAAAGAAGCGGAAATCAGATCCAAGTGCACAGGAAGCCACTGCTGAAAATGATGAGGAGGCAGAGCGCTATCGATTCTATGAAAGTGCGTCTGCAAGAAAAAGAACCGTGACAGCAGAAGAAAGAGAAAGGGCAATTAATGAGTCGAAGACATTTGAACCAACTAATCCATTCTGTCGAGTTGTCCTGCGACCCTCCTATTTATATAGGGGATGTATAATGTATTTGCCTTCCTGCTTTGCAGAAAAGAATTTGAACGGTGTTTCAGGATTCATTAAGCTTCAGATCTCCGATGGGAGACAGTGGCCTGTTCGCTGTCTTTATAAAGGAGGCCGGGCAAAGTTAAGCCAAGGATGGTATGAGTTTACATTAGAGAACAATTTAGGGGAAGGCGATATCTGTGTTTTCGAGCTGCTTAGAACCAGAGAGGTAGTGCTGCAAGTTACTTTGTTTCGTGTAAAAGAGGATGAGTCAGGGTTATTCAACCCTTCTACACAGCCGAGCCAAAATGTGAGCCATGCAAAAATGTTGAACCCTCACTTGCAGCACCGTGTCAGCTCAACAAAATCAGCTAAAAATTAG 1302 0.4147 MPPRPSFHKLILPSSLQTRQLRIPDNFLRKYGAQLSTIATLTVPDGTVWRLGLKKVDNRIWFVDGWQDFVQRYSIGIGYFLVFTYEGNSNFIVHIFNMSTAELNYQSAMRSRTEGPCYANYHPIFEDIEDIDSFEFLDSSPSNLTPGALQDKVFSGSLDQLTPAKNHTPSLQNLFNGGSKLNHVNWGDIGGTLSSKSAIQSTRDIGVQFNANEFKKSTEGLKLRYPNEEGVNNTDTKKTSRKKRKSDPSAQEATAENDEEAERYRFYESASARKRTVTAEERERAINESKTFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQISDGRQWPVRCLYKGGRAKLSQGWYEFTLENNLGEGDICVFELLRTREVVLQVTLFRVKEDESGLFNPSTQPSQNVSHAKMLNPHLQHRVSSTKSAKN 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01255 433 Coils Coil 250 270 - -
Mepo4g01255 433 ProSiteProfiles B3 DNA-binding domain profile. 299 394 IPR003340 GO:0003677
Mepo4g01255 433 CDD B3_DNA 297 392 IPR003340 GO:0003677
Mepo4g01255 433 Pfam B3 DNA binding domain 9 97 IPR003340 GO:0003677
Mepo4g01255 433 Pfam B3 DNA binding domain 302 392 IPR003340 GO:0003677
Mepo4g01255 433 PANTHER B3 DOMAIN-CONTAINING 3 383 - -
Mepo4g01255 433 MobiDBLite consensus disorder prediction 234 261 - -
Mepo4g01255 433 SUPERFAMILY DNA-binding pseudobarrel domain 292 393 IPR015300 -
Mepo4g01255 433 MobiDBLite consensus disorder prediction 220 261 - -
Mepo4g01255 433 CDD B3_DNA 5 97 IPR003340 GO:0003677
Mepo4g01255 433 SUPERFAMILY DNA-binding pseudobarrel domain 3 98 IPR015300 -
Mepo4g01255 433 Gene3D - 2 100 IPR015300 -
Mepo4g01255 433 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Mepo4g01255 433 SMART B3_2 299 394 IPR003340 GO:0003677
Mepo4g01255 433 SMART B3_2 7 99 IPR003340 GO:0003677
Mepo4g01255 433 Gene3D - 276 396 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01255 Mepo-Chr4 16157353 16161420 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01255 3 395 B3 DNA Binding Superfamily AT3G18990 51.269 2.29e-129 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo4g01255 B3 1.1e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01255 - - gmx:100789352 671.003
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g01255 4 16157353 16161420 Mepo4g01255 4 16157353 16161420 ECH