Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01253 ATGCCTCCTCTTCCCTCTTTCCACAAGCTCATTCTTCCAACAACCCTTCAATCTAAGCAATTGAGGATTCCGGATAATTTTCTGAGGAAACATGGGGACCAACTTTCGACTGTCGCAACCCTCAATGTTCCTGACGGCTCCGTCTGGCGTCTAGGATTGAAAAAGGTTGACAACCGTGTTTGTTTTGTGGATGGCTGGCAAGATTTTATTCAACGCTACTCAATTGACATTGGATACTTACTAGTATTCACATACGAAGGAAGGTCAAATTTCATCGTTTATATCTTCCGTACTGTTGAGTTAGACTATCAATCAACAATAAGAAGCCGGGTTGGAGGGCCTTTCCATGAAATCTGTCATCATATTTTTGAAGGCATTGAAGATGTCGACTCCTTTGATTTCCTGGATTCGGCACCTTCAAACCCTACTGGTGCATTGCAAGGCAAGGATTCTACTGGATGTATGGATCAACTGATACCAGCGGTGAATCATATCCAACAAAGACAAGAAAATAAGGATACCAAGAAAACTTCAAGAAAGAAGCGGAAATCAGATCTGAGTGCACAGGAAGCCTCCACTGAAAATGATGAGGAGGCAGAGCGCAAGAAAACTTCAAGAAAGAAGTGGAAATCGCGGAAATCACATCTGAGTGCACAGGAAGCCTCCACTGAAAATGATGAGGAGGCAGAGCGCAAGAAAACTTCAAGAAAAAAGCGGAAATCGCGGAAATCACATCCAAGTGCACAGGAAGCCTCCACTGAAAATGATGAGGAGGCAGAGTGCAAGAAAACTTCAAGAAAGAAGCGGAAATCACATCTGAGTGCACAGGAAGGCTCCATTGAAAATGTAGAGGGTGCAGAGCGCAATCGATCTTATGAAAGTGCGTCTGCAAGAGTAAGAAGCAACATGTCAAATGTAGCCTATGAAAGTGCATCTGCAAGAGTAAGATACAATGTGCCAGATGAAGAAAGAGAAAGGGCAATGAATGAGGCAAAAGCATTTGCACCAACTAATCCTTACTGTCGTGTTAGTCTGCGAGCCTCCTATTTATATAGGGGATGCATAATGTATTTGCCTACCAGATTTGGAGCAAATTTGAAGGGTGTTTCAGGTTTTATTCCGCTTCAGACATCCGATGGTGAGAAACAGTGGCGTGTTCGCTGCCTTTATAATGAAGGCCGGATAAAGTTCAGCCAAGGATGGTACGAATTTACACAAGAGAACGGTTTAGGGGAAGGGGATATCTGTGTTTTTGAGCTGCTTAATACCAAAGATGTAGTGTTGCAAGTTACTTTGTTTCGTCTAAAAGAGGATGAACCCTCGCTTGCAGCACCGCGTTAG 1341 0.4348 MPPLPSFHKLILPTTLQSKQLRIPDNFLRKHGDQLSTVATLNVPDGSVWRLGLKKVDNRVCFVDGWQDFIQRYSIDIGYLLVFTYEGRSNFIVYIFRTVELDYQSTIRSRVGGPFHEICHHIFEGIEDVDSFDFLDSAPSNPTGALQGKDSTGCMDQLIPAVNHIQQRQENKDTKKTSRKKRKSDLSAQEASTENDEEAERKKTSRKKWKSRKSHLSAQEASTENDEEAERKKTSRKKRKSRKSHPSAQEASTENDEEAECKKTSRKKRKSHLSAQEGSIENVEGAERNRSYESASARVRSNMSNVAYESASARVRYNVPDEERERAMNEAKAFAPTNPYCRVSLRASYLYRGCIMYLPTRFGANLKGVSGFIPLQTSDGEKQWRVRCLYNEGRIKFSQGWYEFTQENGLGEGDICVFELLNTKDVVLQVTLFRLKEDEPSLAAPR 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01253 446 Gene3D - 3 99 IPR015300 -
Mepo4g01253 446 Pfam B3 DNA binding domain 12 98 IPR003340 GO:0003677
Mepo4g01253 446 Pfam B3 DNA binding domain 345 434 IPR003340 GO:0003677
Mepo4g01253 446 ProSiteProfiles B3 DNA-binding domain profile. 341 436 IPR003340 GO:0003677
Mepo4g01253 446 MobiDBLite consensus disorder prediction 245 264 - -
Mepo4g01253 446 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Mepo4g01253 446 CDD B3_DNA 339 434 IPR003340 GO:0003677
Mepo4g01253 446 SMART B3_2 341 436 IPR003340 GO:0003677
Mepo4g01253 446 SMART B3_2 7 99 IPR003340 GO:0003677
Mepo4g01253 446 SUPERFAMILY DNA-binding pseudobarrel domain 336 438 IPR015300 -
Mepo4g01253 446 MobiDBLite consensus disorder prediction 162 300 - -
Mepo4g01253 446 MobiDBLite consensus disorder prediction 214 234 - -
Mepo4g01253 446 SUPERFAMILY DNA-binding pseudobarrel domain 3 97 IPR015300 -
Mepo4g01253 446 CDD B3_DNA 5 97 IPR003340 GO:0003677
Mepo4g01253 446 Gene3D - 319 437 IPR015300 -
Mepo4g01253 446 PANTHER B3 DOMAIN-CONTAINING 4 424 - -
Mepo4g01253 446 MobiDBLite consensus disorder prediction 183 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01253 Mepo-Chr4 16132529 16136906 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01253 262 437 REM Transcription Factor Family AT1G49480 56.180 6.32e-56 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mepo4g01253 B3 5e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01253 - - mtr:25482671 676.781