Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01242 ATGAAATCATTGACCGATCTGGGTTTATCTTCTGAATTGGCGAAAACATGTGAAACAAAACGACCTTGGTATTTTGCGATGAAGTTTCAGAGAGAAGTGATTCCCTCTGCGCTACAAGGAAATGATGTGTTTGGACTTTCACCACCACGTTCTGGAAAGACTGTGTCTTTTGTTCTTCCTATATGGCAGGCCCTCCTTGAAACCAGACCCAACCTAACCCCTTTCTTTGCTCTTGTGCTCTATTCCACAAGGAGACTTGCCTTTTATACTGCTGACCACTTTGAAGCTCTAGGCTCTCAATTTGGTATCAAGTGTGCTATAATTGCTCCAGAGAACCGCGAGGAACATGAATCCATCCTGAATTCAGACCAACCTCATATTATTGTCATAGATGATGCACACCTGCTATCTTATGACAACATTCTACATGATATTTTAGAGATTTCAAGAATGATTCCTAGAGAGCGGAGAACATTTCTTTTTTCATCTACATTCACAGACCAGGTCCAAACGATGCTAAGCGCGTGTTTAAGGAATCCTGTGAAGATTGACCTATCTTCCAAATATTCTATTGCGGACACACTGCAGCAGAGTTGCTTTATGCAAGAACATCATAAGGATTGCTACCTTTTATACACTCTCACTAAAATGACTGGAAGTACATTAATGGTATACACTCAGCAATGTGGTACAACGCTTCTTTTGGCTTTGATTCTTAAGAATCTTGGTTTCAGAGCCATCCATATTATTAGTTATATGAGTCAGGCAAAGAAACTTGGATCCTTGAATGCATTCAAGTCTGGGGAGTGCAATATTCTCCTTTGTAGTGACTCCGTTAGTAAGGGACTAGATATTCCAGCAGTAGATATGGTGATTAACTACGACATCCCTTGGTATCCAAACGATTATGTCTACCGCGTGGGATGGACTGTTGCTCATGTTAATGTTGTCATTTCCTTTGTGAGCCCAGATGAAAGGAGACATTTCAATTTGATAGAGCAACATATAGGCAAGAAACTACCATTGTATCCTGCACCATTTGAGGAAGTTTTGCTTTTGGAAGGGCGTGCTATTGAGGCTGAAAGATTAGCACAAGAGGAAATGAAAGAATTCGGTTGGATGAGCGGAGGATACTTAGAAGGGGAGGAGCTAACTGCCGCTAGATTCTTTTTTCCTCGACAGTTAACTGTCAATTCATCCTGCAGACCTGAAATGGCAGAAGCTGCTGCCGATACACAACCTGTTAAAGGTTTTAGGCATATTATTTCAATGCCGAATAAAAAACTAAGCAACCTTTGA 1299 0.4095 MKSLTDLGLSSELAKTCETKRPWYFAMKFQREVIPSALQGNDVFGLSPPRSGKTVSFVLPIWQALLETRPNLTPFFALVLYSTRRLAFYTADHFEALGSQFGIKCAIIAPENREEHESILNSDQPHIIVIDDAHLLSYDNILHDILEISRMIPRERRTFLFSSTFTDQVQTMLSACLRNPVKIDLSSKYSIADTLQQSCFMQEHHKDCYLLYTLTKMTGSTLMVYTQQCGTTLLLALILKNLGFRAIHIISYMSQAKKLGSLNAFKSGECNILLCSDSVSKGLDIPAVDMVINYDIPWYPNDYVYRVGWTVAHVNVVISFVSPDERRHFNLIEQHIGKKLPLYPAPFEEVLLLEGRAIEAERLAQEEMKEFGWMSGGYLEGEELTAARFFFPRQLTVNSSCRPEMAEAAADTQPVKGFRHIISMPNKKLSNL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01242 432 SMART ultradead3 22 198 IPR014001 -
Mepo4g01242 432 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 332 IPR027417 -
Mepo4g01242 432 Gene3D - 1 124 IPR027417 -
Mepo4g01242 432 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 34 183 IPR014001 -
Mepo4g01242 432 Gene3D - 125 190 IPR027417 -
Mepo4g01242 432 Gene3D - 191 353 IPR027417 -
Mepo4g01242 432 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 209 351 IPR001650 -
Mepo4g01242 432 Pfam Helicase conserved C-terminal domain 210 308 IPR001650 -
Mepo4g01242 432 SMART helicmild6 233 308 IPR001650 -
Mepo4g01242 432 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 3 129 - -
Mepo4g01242 432 Pfam DEAD/DEAH box helicase 28 121 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01242 Mepo-Chr4 15966558 15973193 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01242 42 308 Eukaryotic Initiation Factors Gene Family AT5G11170 26.689 1.52e-24 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01242 K14777 - gmx:100775796 353.214