Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01198 ATGATGAAGACTCCAAATTTGAACTTGGAAGCTGAAAATAGTTTAGAAGTAAGCAGCCAAGTAGGTTCCAACATATACTTACAAGAATCATCTCATGATCTTACCAAAGACAGTGCCACAACTTCTTCTTGTCTTACCAAGGCAGACATTAATCCAGGTTCTATTTCCCTTGACCTGACTCTCAACTTCGATCCGAGCGATGAAGATTTGAAGGAAACAAGCGACACAAACAGTGAAGTACTAGGAGCTGATCATGCCCGTAACACTGCTTCCGCTCCAACGATTCATAGAGTTTTCTCTTGTAATTATTGTAAGAGGAAATTCTTTAGCTCACAAGCATTAGGTGGACATCAGAATGCTCATAAAAGGGAGAGAACGATGGCAAAGCGTGCTATGCGAGTTGGGATGTTTACCGAAAGGTATACAAGCTTAGCTTCTTTACCTCTTCATGGTTCTTCTTCTTTTCATTCTTTTGGTATTCAAGCTCATGCTGCAATGCACCAAAACCACATGCCATCATCGTCGTCGATGCTGATGAGGGCTCATGACATGAGACCTACAGCGAAATTCGAGAAAGATTGTTTCGGACCAGCACCGATGTTTATGCATAATGATGATGTTGGCGTATTTTGGCCTGGAAGTTTCAGGCAGATAAATCAAAGTGTTCATAATTCAAATTTGAATCATAACTCAAATTTGAATACTAGTTTTGTAGCAACTGAACCTCCTCAACAAACATCTACTACATATCCTGATCTTACTTTGAGGCTTTAA 774 0.4005 MMKTPNLNLEAENSLEVSSQVGSNIYLQESSHDLTKDSATTSSCLTKADINPGSISLDLTLNFDPSDEDLKETSDTNSEVLGADHARNTASAPTIHRVFSCNYCKRKFFSSQALGGHQNAHKRERTMAKRAMRVGMFTERYTSLASLPLHGSSSFHSFGIQAHAAMHQNHMPSSSSMLMRAHDMRPTAKFEKDCFGPAPMFMHNDDVGVFWPGSFRQINQSVHNSNLNHNSNLNTSFVATEPPQQTSTTYPDLTLRL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01198 257 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Mepo4g01198 257 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 29 201 IPR044246 GO:0009788
Mepo4g01198 257 SUPERFAMILY beta-beta-alpha zinc fingers 97 127 IPR036236 -
Mepo4g01198 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Mepo4g01198 257 FunFam Zinc finger protein 2 75 145 - -
Mepo4g01198 257 Gene3D Classic Zinc Finger 75 146 - -
Mepo4g01198 257 MobiDBLite consensus disorder prediction 66 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01198 Mepo-Chr4 15584581 15588069 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01198 97 257 C2H2 Transcription Factor Family AT1G66140 42.308 1.11e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo4g01198 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01198 - - psat:127096958 350.903