Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01048 ATGTCGTCCTCCAATGAACCCTATTTCATCCACATTGAAGAATCCTTTGACACCATCCCTCAATTTTTTTATCCACATGAATCATGTTTCCTCATTAAACGTCACTGCTTCCACTCCCCTTCATTCAATCATTATTCCTTCATCATTCCTCGTAACATCTTATGTGATTACGACGATTTTGAATCCGTGGATCCAGATAGTTTGTCCCATACCTTGTTACGCAACGCTTTCTCGGTGCTTCCTGATGAAGCGTTGGAAGACACTCTATTTCTTATGGGTGACAATGCTAGGCATATGAGCAGAGTCAACTTTGAAGGAGATAGAATATTGAAGATGGATGTATTGGTTGGCCAAAAGGGATCTAGTACAATCCTAGAGAAGGTCAAATTGGAAGATATTGCTACTAGTATTTCAATGAAAGAATGTGCAATTTGTTTGGAGGAATTTTGTTTTGGATCAGAAGAACAACACATTGTTCGTACCAAGTGCATGCATGTTTTCCATGAGCAATGTGTTACTAAGTGGATTATGCACTGTGACATTACCAATCCAGAATATCCCTGCCCAATGTGTCGTTCCCATATTCAATGA 591 0.3942 MSSSNEPYFIHIEESFDTIPQFFYPHESCFLIKRHCFHSPSFNHYSFIIPRNILCDYDDFESVDPDSLSHTLLRNAFSVLPDEALEDTLFLMGDNARHMSRVNFEGDRILKMDVLVGQKGSSTILEKVKLEDIATSISMKECAICLEEFCFGSEEQHIVRTKCMHVFHEQCVTKWIMHCDITNPEYPCPMCRSHIQ 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01048 196 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 109 194 - -
Mepo4g01048 196 CDD RING-H2 142 192 - -
Mepo4g01048 196 Pfam Ring finger domain 140 192 IPR001841 -
Mepo4g01048 196 SUPERFAMILY RING/U-box 141 195 - -
Mepo4g01048 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 119 196 IPR013083 -
Mepo4g01048 196 SMART ring_2 142 191 IPR001841 -
Mepo4g01048 196 ProSiteProfiles Zinc finger RING-type profile. 142 192 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01048 Mepo-Chr4 13893035 13893625 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01048 124 195 C3H Transcription Factor Family AT4G12190 30.137 2.67e-08 47.4