Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01032 ATGGGGAGACGTAAGATTGAGATCAAGAGGATTCAAAACTCAAGCAACAAACAAGTTACTTACTCAAAGAGAAAAAATGGAATTCTAAAGAAAGCAAAAGAAATAACGGTCCTATGTGATGCTCAAGTTTCCCTTATCATCTTTGCTCCTTCTGGAAAGATGCATGACTACATCAGCCCTTCTACCACGTTGATTGACATACTAGAGAGATACCATAAAGCACATGTGAATAGGCTTTGGGATGCTAAGCATGAGCTTAGCCAATACATAAATTTTAGGCACTTGAAGGGAGATGATATCAATTCACTAAACTACAAGGAATTGATGAGCTTAGAGGATGTTTTAGAGAATGGTCTCCTCACTATACACAAAATCTTAGAGGAGGAGAACAAGGAACTAAATTGTATCCTGCAGCAGCTGCAACGTATGGAAGTGGAAGGTGAGAGAGAAATGGATAATGATGAATTTGATGAGAGTGGAAGAGATTTCAATTCCCATATGCCATTTTCATTTTTCGTTCAGCCTATGCAACCAAATCTTCATGAAAGGATCTAA 555 0.3802 MGRRKIEIKRIQNSSNKQVTYSKRKNGILKKAKEITVLCDAQVSLIIFAPSGKMHDYISPSTTLIDILERYHKAHVNRLWDAKHELSQYINFRHLKGDDINSLNYKELMSLEDVLENGLLTIHKILEEENKELNCILQQLQRMEVEGEREMDNDEFDESGRDFNSHMPFSFFVQPMQPNLHERI 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01032 184 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo4g01032 184 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Mepo4g01032 184 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Mepo4g01032 184 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mepo4g01032 184 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo4g01032 184 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo4g01032 184 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo4g01032 184 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mepo4g01032 184 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 151 - -
Mepo4g01032 184 Coils Coil 123 146 - -
Mepo4g01032 184 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Mepo4g01032 184 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01032 Mepo-Chr4 13672482 13676642 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01032 1 119 MADS-box Gene Family AT5G20240 56.818 2.79e-44 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo4g01032 SRF-TF 3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01032 K09264 - gmx:100817554 263.077