Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01031 ATGGGGAGAGGTAAGATTGAGATAAAGAGGATTGAGAACTCAAGCAACAGACAAGTTACATATTCAAAGAGAAAAGGTGGGATTTTAAAGAAAGCTAAAGAAATCAATGTTCTATGTGATGCTCAAGTTTCCACTATCATCTTTGCTCCTTCTGGAAAGATGCATGAATACATTAGCCCTTCTACCACGTTGATTGAAATGCTGGAGAGATACCATAAAGCATCTGGAAAGAGGCTTTGGGATGCCAAACATGAGAACTTAAGGAATGAAATTGAGAAACTCAAGAAAGAGAATGAAGACATGGAAATTAAGCTCAGGTATCACTTGAAGGGAAAGGATATCAACACACTAAACTACAAGAAGTTGATGAGCTTAGAAGATGTCTTAGAAAATGGTCTCCTCACTATCCGTGACAAACAGATGGAACTATACCAGATGCTCAAGAGAAACGACAAGATCTTGGAGGATGAGAACAGAGAGCTTAATTTTATCCTCCAGCAACAACAACGTATGACAGTGGAAGGTGGAAGAGAAATGGATGATGATCAATTTGATGAGAGTGGAAGTGATTTCAATTCCCAGATGCCATTTCATCTCGTGTTCAGCCTATGCAGCTAA 618 0.39 MGRGKIEIKRIENSSNRQVTYSKRKGGILKKAKEINVLCDAQVSTIIFAPSGKMHEYISPSTTLIEMLERYHKASGKRLWDAKHENLRNEIEKLKKENEDMEIKLRYHLKGKDINTLNYKKLMSLEDVLENGLLTIRDKQMELYQMLKRNDKILEDENRELNFILQQQQRMTVEGGREMDDDQFDESGSDFNSQMPFHLVFSLCS 205
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01031 205 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 159 - -
Mepo4g01031 205 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mepo4g01031 205 Pfam K-box region 82 163 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo4g01031 205 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Mepo4g01031 205 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mepo4g01031 205 ProSiteProfiles K-box domain profile. 84 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mepo4g01031 205 Gene3D - 13 104 IPR036879 GO:0003677|GO:0046983
Mepo4g01031 205 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mepo4g01031 205 Coils Coil 77 104 - -
Mepo4g01031 205 SUPERFAMILY SRF-like 2 96 IPR036879 GO:0003677|GO:0046983
Mepo4g01031 205 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mepo4g01031 205 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mepo4g01031 205 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01031 Mepo-Chr4 13663939 13665746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01031 1 144 MADS-box Gene Family AT5G20240 60.417 3.82e-59 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mepo4g01031 K-box 7.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01031 K09264 - gmx:100817554 295.819