Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01004 ATGGGCGAGGAAGTGTGTATGCCTATCAGTCATGTGACAAGAGTCATGCAGAGTGTTCTTCTACCGGACACAATAATCACCGATGATGCTAAGGATTTGATGCAATTGTGTGTGTCTAAATTTATGGACATGGTCACAAGTGAGGCTTTCCAGCAAGCCAATGTAGAACATCAAATGATTGTTTCTGCTGATGATTTACTATGGACGATGAATAGGTTGGGCTTTGAGGAATTTGTTAGGTCTCTTGGGAAAGACCTCAAAAACTATCGCAACAACATTGGCTCAAACAATGCCATTGCCAATGATGATGACCTAAATTAA 321 0.4081 MGEEVCMPISHVTRVMQSVLLPDTIITDDAKDLMQLCVSKFMDMVTSEAFQQANVEHQMIVSADDLLWTMNRLGFEEFVRSLGKDLKNYRNNIGSNNAIANDDDLN 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01004 106 Gene3D Histone, subunit A 2 104 IPR009072 GO:0046982
Mepo4g01004 106 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 6 95 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mepo4g01004 106 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 7 69 IPR003958 -
Mepo4g01004 106 SUPERFAMILY Histone-fold 3 101 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01004 Mepo-Chr4 13303278 13303663 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01004 7 90 CCAAT-HAP3 Transcription Factor Family AT2G38880 42.857 2.93e-21 80.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mepo4g01004 CBFD_NFYB_HMF 1.6e-11 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01004 K08065 - twl:119989291 83.9593