Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g01002 ATGACAAGAATCATGCAGTGTGCTCTTCCATCGTACGCAAAAATATCTCAAGATGCTAAGGCGTCAACACAACTTTGTGTGTCTGAATTCATGGGCATCATCATCACTGAGGCTGTTGAGAAATGCAATGAAGAAAGTCGAAAGATCATTAGTGGTGAAGATTTAATATGGGCTATGGGTAGATTGGGGTTTGAGGACTATGTTGGTCCTCTCTCTCTTCTCCTCCAAAACTATCGCAACCGTGCTAGTTGCTCGAGCAGTGGCAATGGCCAACATTGA 279 0.4373 MTRIMQCALPSYAKISQDAKASTQLCVSEFMGIIITEAVEKCNEESRKIISGEDLIWAMGRLGFEDYVGPLSLLLQNYRNRASCSSSGNGQH 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g01002 92 PRINTS CCAAT-binding transcription factor subunit A signature 61 79 - -
Mepo4g01002 92 PRINTS CCAAT-binding transcription factor subunit A signature 42 60 - -
Mepo4g01002 92 PRINTS CCAAT-binding transcription factor subunit A signature 23 41 - -
Mepo4g01002 92 Gene3D Histone, subunit A 1 91 IPR009072 GO:0046982
Mepo4g01002 92 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 2 81 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mepo4g01002 92 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 2 59 IPR003958 -
Mepo4g01002 92 SUPERFAMILY Histone-fold 2 81 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g01002 Mepo-Chr4 13289938 13290216 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g01002 1 79 CCAAT-HAP3 Transcription Factor Family AT4G14540 59.494 1.39e-30 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mepo4g01002 CBFD_NFYB_HMF 7.3e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g01002 K08065 - smo:SELMODRAFT_450078 100.523