Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00979 ATGTCTTACTTTAACATCAGTGTCTTTACAGTCCATTTTGAAGTAGGTAATTCTTCAACAAACATTGAATCTCAAAGCAACGTCGACAACAAAAACAATAACTTTCACACCGGAATTAAGCAACATTTGCCCACAACAAAGAATGAGGAGCTGCGCATTCCCATCGTGCAATTGACAAGAATCATGTGGCGTGCTCTTCCCCCGCATGTAAAAATCTATGATGGTGCTAAAGAGTCAATTCAATTGTGTTTATCTGAATTCATGAGCATCATCACGAGTGAGGCTAGTGAGCGTTGCAAGATAGAGCATCGAAAGATCGTTACAGCGAACGATTTAATATGGGCAATGGATAGGTTAGGGTTTGATGACTATGTTGGCCCTCTAGTCTTTTACCTCCAAAGGTACCGTAACTATGAGGCTCAGCTCATAGACATACCAATTACATTTGGATTCGACAAGGATGGATCGGGTGCTAGTGGCTCGAACAATGGCAGTGATAATATTCAAGGTTGA 513 0.4113 MSYFNISVFTVHFEVGNSSTNIESQSNVDNKNNNFHTGIKQHLPTTKNEELRIPIVQLTRIMWRALPPHVKIYDGAKESIQLCLSEFMSIITSEASERCKIEHRKIVTANDLIWAMDRLGFDDYVGPLVFYLQRYRNYEAQLIDIPITFGFDKDGSGASGSNNGSDNIQG 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00979 170 PRINTS CCAAT-binding transcription factor subunit A signature 99 117 - -
Mepo4g00979 170 PRINTS CCAAT-binding transcription factor subunit A signature 80 98 - -
Mepo4g00979 170 PRINTS CCAAT-binding transcription factor subunit A signature 118 136 - -
Mepo4g00979 170 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 23 140 IPR027113 GO:0001228|GO:0006355|GO:0016602
Mepo4g00979 170 SUPERFAMILY Histone-fold 49 141 IPR009072 GO:0046982
Mepo4g00979 170 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 52 116 IPR003958 -
Mepo4g00979 170 Gene3D Histone, subunit A 44 143 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00979 Mepo-Chr4 13003284 13004891 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00979 45 141 CCAAT-HAP3 Transcription Factor Family AT5G47670 52.577 2.64e-34 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Mepo4g00979 CBFD_NFYB_HMF 8e-14 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00979 K08065 - atri:130824101 127.102