Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00978 ATGGAAACTCAAAAGCTTCCAATAGATCATGACACCTTGTTATTATCAGATATATTCAATGAAACTGAGTTTGGTTCAGAAGATCTCTTTTCCATTTTGGAAAACTTCAATAATTTTTCTCCCATTATCAATGACCAAAACTCAAAAACAACATCTTCAAGTGCTGTACAAGATTGTGAAACTGAAAATGCTGAAACATCACAAAAATGCAAGAGACAGAAGATTGTGACAACAATTATAGAGGAACAAAACAACGATGGACAACACCGTATGTCGCATATCACGGTCGAACGCAATCGAAGAAAGCAAATGAATGAGCAGTTATCTATCTTGAAGTCACTTATGCCTTGCTTTTATGTTAAAAGAGGAGATCAAGCATCAATAGTTGAAGGAGTAATTGATTACATAAACGAGTTACATCAACTACTACAATGCCTAGAGTCCAAGAAACAAAGAAAAGTTTACAATGAAGTATCAAGTCCAAGACTAATAGTTTCAAGTCCAAGACCTTTACCACTAAGTCCTAGAATAATCTTACCAATTAGTCCAAGAACTCCATACCAATGGCTGCAACAATGTGGTGGTTATCTTTCATCTGAGCCATCTCCAACTTCTTCAGCTTCTTCCATCAATGATAACATCAACGAGCTTGTCGCGAATTCAACATCTTCGGTTGCTGATGTTGAGGTTAAGTTTTGTGGTTCACATGTGCTTTTGAAAACCATTTCATCGCGAATTCCGGGGCAGGCTCTTCGAATAATGTCTGTTCTTGAAGATCTAAACCTTGAGATTGTTCATGTTAGAGTTAATACTGCTGATGAAACCATGCTATACTTGTTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCTGAAGAACTTGCTCAACAAATCCAGCAAACATTTTGCTAA 915 0.3661 METQKLPIDHDTLLLSDIFNETEFGSEDLFSILENFNNFSPIINDQNSKTTSSSAVQDCETENAETSQKCKRQKIVTTIIEEQNNDGQHRMSHITVERNRRKQMNEQLSILKSLMPCFYVKRGDQASIVEGVIDYINELHQLLQCLESKKQRKVYNEVSSPRLIVSSPRPLPLSPRIILPISPRTPYQWLQQCGGYLSSEPSPTSSASSINDNINELVANSTSSVADVEVKFCGSHVLLKTISSRIPGQALRIMSVLEDLNLEIVHVRVNTADETMLYLFTIKIGIECQLSAEELAQQIQQTFC 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00978 304 Pfam Helix-loop-helix DNA-binding domain 90 139 IPR011598 GO:0046983
Mepo4g00978 304 PANTHER TRANSCRIPTION FACTOR FAMA 17 303 IPR044283 GO:0003700|GO:0010052
Mepo4g00978 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 87 156 IPR036638 GO:0046983
Mepo4g00978 304 CDD bHLH_AtFAMA_like 91 162 - -
Mepo4g00978 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 88 139 IPR011598 GO:0046983
Mepo4g00978 304 Gene3D - 79 162 IPR036638 GO:0046983
Mepo4g00978 304 SMART finulus 94 145 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00978 Mepo-Chr4 12996654 12998817 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00978 19 284 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 44.745 1.91e-70 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mepo4g00978 HLH 5.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00978 K20558 - gmx:100777437 317.775