Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00910 ATGATATGGTATTATGATGTAAGAAGTAAGCAGAATCTAATGGTAAGTTCTAGTGCAGGGGCGGCAAATCTTGATGTTATTCAGGAAGTAGAGTATGTCAAACAAGAGGCAAAAATTGTTTACCTCCTTGAGTGCCTACAGAAAACCCCACCTCCTGTTTTGATATTTTGTGAGAATAAGGCAGATGTCGATGACATTCATGAGTATCTTCTCTTGAAAGGAGTGGAAGCCGTGGCTATTCATGGAGACAAGGATCAGGAAGATAGAGAGTATGCTATTTCGTCATTTAAGGCTGGAAAGAAAGATGTGTTGGTTGCATCCAAAGGTTTGGATTTTCCTGATATTCAGCATGTCATTAACTACGACATGCCTGCTGAAATTGAAAATTATGTCCATAGGATTGGACGTACTGGAAGATGTGGCAAAACTGGTATAGCGACAACATTTATAAACAAGAACCAAACTGAGACAACATTGCTTGATTTGAAACACCTTTTGCAAGAAGCAAAACAGAGGATTCCCCCTGTTCTGGCTGAGCTGATTGATCCAATGGAAGATAATGAAGAAATCACTGGCATAAGTGGTGTCAAGGGATGTGCTTTTTGTGGCGGGCTTGGTCATCGTATGCGCGATTGTCCAAAATTAGATCGTAATAGTGTGGCAAATGCAAATAATAGGAAGGATTGTTTTGGATCTGGAGGTTACAAAGGAGAAATTTGA 720 0.4 MIWYYDVRSKQNLMVSSSAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGDKDQEDREYAISSFKAGKKDVLVASKGLDFPDIQHVINYDMPAEIENYVHRIGRTGRCGKTGIATTFINKNQTETTLLDLKHLLQEAKQRIPPVLAELIDPMEDNEEITGISGVKGCAFCGGLGHRMRDCPKLDRNSVANANNRKDCFGSGGYKGEI 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00910 239 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 25 181 IPR001650 -
Mepo4g00910 239 SUPERFAMILY Retrovirus zinc finger-like domains 198 217 IPR036875 GO:0003676|GO:0008270
Mepo4g00910 239 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 28 184 IPR027417 -
Mepo4g00910 239 SMART c2hcfinal6 198 214 IPR001878 GO:0003676|GO:0008270
Mepo4g00910 239 FunFam Probable ATP-dependent RNA helicase DDX41 24 182 - -
Mepo4g00910 239 Coils Coil 152 172 - -
Mepo4g00910 239 ProSiteProfiles Zinc finger CCHC-type profile. 199 214 IPR001878 GO:0003676|GO:0008270
Mepo4g00910 239 CDD SF2_C_DEAD 26 150 - -
Mepo4g00910 239 Pfam Zinc knuckle 198 214 IPR001878 GO:0003676|GO:0008270
Mepo4g00910 239 Gene3D - 189 227 - -
Mepo4g00910 239 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 18 179 - -
Mepo4g00910 239 Pfam Helicase conserved C-terminal domain 38 141 IPR001650 -
Mepo4g00910 239 SMART helicmild6 64 141 IPR001650 -
Mepo4g00910 239 Gene3D - 24 182 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00910 Mepo-Chr4 11783777 11788435 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00910 54 181 Eukaryotic Initiation Factors Gene Family AT1G72730 31.061 9.67e-20 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00910 K13116 - gmx:100814127 410.223