Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00887 ATGGAAGGCACAACCAACAACATTTTCCAAACCACCTTTTCCTCCGACAACAACAAGACAAACAACACTTCCGACAATTTCATTATTGAGGACCTCCTTAACCTCAACAATGACGTCGACGACGACGCTACCGTCATTTCCGACACCAACCTTGACTTAGCCACGGGCAACTCAACCGCCTCCTCCTCCACCGTTACCGCGGTCAATAGCGTTAGCTCGTCATCGTTGTCTGGGTGCGACCCTAATGTCGTTCCATATATCGGCTGTCAGAATTTTTCTGACAGCCATTTCTCCGGAGACCTGTGTGTTCCGGATGATGATTTACGGGAGCTGGAATGGATTTCCAATATTGTTGAGGAATCGTTTTCAAGCGAGGATCTTCAAAAGATGCAACTGATATCAGGAATGAAGGTGCGAAACCAGGACGAAGAACCCCGTGAGCTTTCCCAACCCAACCGAAACAGTCCTATATTCAACAAGGAAGTTTTGGTTCCAGCTAAGGCCCGTAGCAAGAGGACTCGTGGGCCCCCTTGCGACTGGAGCTCACGTCTTCTTGTTTTGTCTCAAACAACACCGTCTTCTTCTGAGTCAGAACTCCTTATTCCCACCCCCACCTTACCTACCGTCACTGTTCCAAGGAAGCAGGCTAAGACTGCTCCAAGAAGAAAGGACAGTGACGGAGGGTCAGGTGGAGATGGTCGGAGGTGTCTGCATTGCATGACAGACAAGACACCACAGTGGCGAACCGGGCCTAATGGCCCAAAAACATTATGCAATGCTTGTGGTGTAAGATATAAGTCGGGTCGATTGGTGCCCGAATACAGGCCTGCAGCTAGCCCTACATTTGTGCTGACCAAACACTCCAACTCGCATCGTAAAGTGTTGGAGCTACGGAGGCAGAAGGAAATGTTGCGGGCACACCAACACCAACAAAACCAGATTTTACAACATCAGAGTATGATGTTTGATATGTCTAACAATGATGATTACTTGATTCACCAACATATGGGACCTGATTTTAGGCAGATGATGTAG 1035 0.4831 MEGTTNNIFQTTFSSDNNKTNNTSDNFIIEDLLNLNNDVDDDATVISDTNLDLATGNSTASSSTVTAVNSVSSSSLSGCDPNVVPYIGCQNFSDSHFSGDLCVPDDDLRELEWISNIVEESFSSEDLQKMQLISGMKVRNQDEEPRELSQPNRNSPIFNKEVLVPAKARSKRTRGPPCDWSSRLLVLSQTTPSSSESELLIPTPTLPTVTVPRKQAKTAPRRKDSDGGSGGDGRRCLHCMTDKTPQWRTGPNGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMLRAHQHQQNQILQHQSMMFDMSNNDDYLIHQHMGPDFRQMM 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00887 344 MobiDBLite consensus disorder prediction 191 235 - -
Mepo4g00887 344 MobiDBLite consensus disorder prediction 217 235 - -
Mepo4g00887 344 CDD ZnF_GATA 235 282 IPR000679 GO:0006355|GO:0043565
Mepo4g00887 344 Gene3D - 229 313 IPR013088 GO:0006355|GO:0008270
Mepo4g00887 344 PANTHER GATA TRANSCRIPTION FACTOR 20 311 - -
Mepo4g00887 344 MobiDBLite consensus disorder prediction 138 160 - -
Mepo4g00887 344 SMART GATA_3 230 280 IPR000679 GO:0006355|GO:0043565
Mepo4g00887 344 PIRSF Txn_fac_GATA_plant 8 327 IPR016679 GO:0003677|GO:0005634|GO:0045893
Mepo4g00887 344 ProSitePatterns GATA-type zinc finger domain. 236 261 IPR000679 GO:0006355|GO:0043565
Mepo4g00887 344 Pfam GATA zinc finger 236 269 IPR000679 GO:0006355|GO:0043565
Mepo4g00887 344 FunFam GATA transcription factor 226 313 - -
Mepo4g00887 344 MobiDBLite consensus disorder prediction 191 212 - -
Mepo4g00887 344 ProSiteProfiles GATA-type zinc finger domain profile. 230 266 IPR000679 GO:0006355|GO:0043565
Mepo4g00887 344 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 231 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00887 Mepo-Chr4 11513912 11515425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00887 97 344 C2C2-Gata Transcription Factor Family AT5G25830 57.358 1.41e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo4g00887 GATA 1.2e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00887 - - psat:127091887 417.157