Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00843 ATGAATGAGACTAACTTCGCAAACTTTGCTTTATCTAATGTAATTGGTTCTTCTCATGCCAAATTTTATTGGGGTTATGGAATAGAGAGGAAGGTCAAACTTATAATTCTAATTGATGGACCAGATTTGATGCAAGCTTGTATATCTCATGTCTTATCGAAAGAAGACTTTGAGACTCTAAACTTGAGCAGAAGTATGATGGAAAGAGGAGAATGTCCGCCCCTCGTGGTTGTTTTTGATCCTGTAGAAGGGTTCACTGTAGAAGCGGATAAATCCATAAAAGACTTGACCGTAATCAGAGAATATGTTGGAGATATAGACATTTTAAAGAATCGTGAATATGATGGCGGAAATAGGATTATGACACTTCTTTATGCATCCAATCCTTCACAATCACTGGTTGTCTTTCCAGATAAACGTAGCAACATAGCCCTTTTCATTACTGGCATCGACAATCACACACCGTGCTCGATTTCTCATTTATCACTTACACACACAGGCAAACCCCCGTCTCACATCCCAAATCTCATGGCTTCATTGAGTCGAAGAAGAACACAAGCTCCCAAAAAAAAATCCTTCAACGATGACGACATTATTTGCCAGAAATGCAACTCCGGCAAATCCCCAACCAAGTTGCTTCTTTGCGACAATTGCAACAAAGGCTACCATCTCTTCTGCCTCACTTCCGCCCTGAAATCGTCGTGGTTTTGCCCCTCTTGCTCCCACAACACCAGCACTAAATATGTAAGGAAGAAGAGAAAGCGGGGTAGTCGTTGGGTGGTTTCGAAAAAGAAATGGAATCTATTGCCATTTGTGCCGAGTGATGATTCAAAGAGGAGATCAAAACAGATGGCTTCGTTGGAAAATGCGTTGGCTGCAACTGAAGCGAAGTTCAGCAACGCACTTACGTATATGCCTGGAATGGCACCAAGGGATGCAAATTCTACTGCTCTTGAAGATGGGGGTGGGAGAATTCAGGTATTATCAAAAGAAGGCACCAAGGCTCTAAACTTGTGCACCCGTATGATGGAAAGAAGAGAATGTCCACCCCTCATGGTTGTTTATGATCCGTTGGAAGGGTTTACTGTTGAAGCTGATGAACCCATTGAAGCTTTGACAATAATAGCGGAATATGTTGGAGATGTGGACTACATAAAGAATCGGGAAGATGATGAGGGGATTAATAGCATGATGACACTTCTTTATACTTCCGATCCTTCACAATCGCTGATCATCTGCCCAGATAAACGTAGCAACATAGCACGTTTCATAAGTGGAATCAACAATCACACTCGTGAAGGAAAAAAGAAGCAGAACGTGAAATCAGCGAGATTTAATGTTAATGGTGAATTTCGGGTTCTTTTAATTGCTAAAAGATATATACCAAAGGGAGAAAGGTTGTATTATGACTACAATGGATCCGAAAATGCATATCCAACTAAGCATTTTGTTTAA 1455 0.4096 MNETNFANFALSNVIGSSHAKFYWGYGIERKVKLIILIDGPDLMQACISHVLSKEDFETLNLSRSMMERGECPPLVVVFDPVEGFTVEADKSIKDLTVIREYVGDIDILKNREYDGGNRIMTLLYASNPSQSLVVFPDKRSNIALFITGIDNHTPCSISHLSLTHTGKPPSHIPNLMASLSRRRTQAPKKKSFNDDDIICQKCNSGKSPTKLLLCDNCNKGYHLFCLTSALKSSWFCPSCSHNTSTKYVRKKRKRGSRWVVSKKKWNLLPFVPSDDSKRRSKQMASLENALAATEAKFSNALTYMPGMAPRDANSTALEDGGGRIQVLSKEGTKALNLCTRMMERRECPPLMVVYDPLEGFTVEADEPIEALTIIAEYVGDVDYIKNREDDEGINSMMTLLYTSDPSQSLIICPDKRSNIARFISGINNHTREGKKKQNVKSARFNVNGEFRVLLIAKRYIPKGERLYYDYNGSENAYPTKHFV 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00843 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 248 IPR013083 -
Mepo4g00843 484 ProSitePatterns Zinc finger PHD-type signature. 200 240 IPR019786 -
Mepo4g00843 484 CDD SET_ATXR5_6-like 347 484 - -
Mepo4g00843 484 SUPERFAMILY FYVE/PHD zinc finger 191 251 IPR011011 -
Mepo4g00843 484 SMART PHD_3 199 241 IPR001965 -
Mepo4g00843 484 Gene3D SET domain 39 177 IPR046341 -
Mepo4g00843 484 Gene3D SET domain 253 484 IPR046341 -
Mepo4g00843 484 PANTHER N-LYSINE METHYLTRANSFERASE KMT5A 55 113 - -
Mepo4g00843 484 ProSiteProfiles SET domain profile. 349 472 IPR001214 GO:0005515
Mepo4g00843 484 SUPERFAMILY SET domain 340 474 IPR046341 -
Mepo4g00843 484 ProSiteProfiles Zinc finger PHD-type profile. 197 243 IPR019787 -
Mepo4g00843 484 Pfam PHD-finger 199 242 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00843 Mepo-Chr4 11122046 11127312 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00843 196 259 C2H2 Transcription Factor Family AT3G01460 29.730 1.59e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mepo4g00843 PHD 1.1e-07 CL0390