Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00828 ATGGATTTGGATAGTATTGAGTGTGTTTCATCTTCGGATGGAATGGATGAAGATGAGATCCAACATCGTATTCTTCATCCACATCATCAACAACATCATCATCACTCAGAGTTTTCTTCATTGAAACCTCGTAATGGAGGAAACAATAATCATGGTGTTAATTTTATTGGTTCTACTGCTATTGCTCCTGCTACAAGTGTTCATGAGTTGTTGGAATGTCCTGTTTGTACCAATTCAATGTATCCTCCAATTCATCAGTGCCACAACGGTCACACATTGTGTTCCACATGTAAAACAAGGGTTCACAATCGATGTCCGACTTGTAGACAAGAGCTTGGAGATATTAGGTGTCTGGCACTGGAAAAGGTTGCTGAGTCACTCGAGTTACCCTGCAAATACTACCCTCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTGAAGCATGAGACAGTATGCAATTTTAGACCGTACACCTGTCCTTATGCTGGATCAGAGTGCTCTGCTGTTGGCGATATTAATTTCCTCGTTGCACATTTGAGGGACGATCATAAGGTGGACATGCACACAGGATGCACTTTCAACCATCGTTATGTGAAGTCAAATCCGCGTGAAGTAGAGAATGCTACTTGGATGCTCACTGTATTTCATTGTTTTGGCCAATACTTCTGCCTTCACTTTGAAGCTTTCCAGCTAGGCATGGCTCCAGTTTACATGGCATTCCTTCGTTTCATGGGAGACGAGAACGAGGCTCGGAACTATACCTATAGCCTTGAGGTTGGAGCAAATGGAAGAAAACTCATCTGGGAGGGTACACCACGGAGTATCCGTGATAGCCACCGTAAAGTTCGAGATAGTCACGACGGCCTCATAATTCAACGAAATATGGCTCTATTTTTCTCTGGTGGTGATAGGAAGGAACTGAAATTAAGAGTCACAGGAAGAATATGGAAAGAACAACAGAATCCAGATGGTGGGGTGTGTATACCAAATCTTTGCAGCTGA 1008 0.4296 MDLDSIECVSSSDGMDEDEIQHRILHPHHQQHHHHSEFSSLKPRNGGNNNHGVNFIGSTAIAPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYPLGCPEIFPYYSKLKHETVCNFRPYTCPYAGSECSAVGDINFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYTYSLEVGANGRKLIWEGTPRSIRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQQNPDGGVCIPNLCS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00828 335 SUPERFAMILY RING/U-box 65 113 - -
Mepo4g00828 335 ProSiteProfiles Zinc finger SIAH-type profile. 126 186 IPR013010 GO:0008270
Mepo4g00828 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 125 IPR013083 -
Mepo4g00828 335 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 178 314 IPR008974 GO:0005515
Mepo4g00828 335 SUPERFAMILY TRAF domain-like 126 318 - -
Mepo4g00828 335 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 49 320 - -
Mepo4g00828 335 FunFam E3 ubiquitin-protein ligase SINAT3 125 181 - -
Mepo4g00828 335 CDD Sina 187 315 - -
Mepo4g00828 335 FunFam E3 ubiquitin-protein ligase SINAT5-like 182 314 - -
Mepo4g00828 335 Pfam Seven in absentia protein family 115 314 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mepo4g00828 335 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 126 177 IPR013083 -
Mepo4g00828 335 CDD RING-HC_SIAHs 71 109 - -
Mepo4g00828 335 ProSiteProfiles Zinc finger RING-type profile. 73 109 IPR001841 -
Mepo4g00828 335 FunFam E3 ubiquitin-protein ligase SINAT3 11 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00828 Mepo-Chr4 10831301 10836968 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00828 57 321 C3H Transcription Factor Family AT2G41980 78.358 7.41e-160 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00828 K04506 - fve:101313744 635.95