Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00827 ATGGACTTTGGTAGACTTGGACCGTCTGATCCTGGTGGCTCCTCCCGTCGATCCACCGCACCTCTAACACCCTCCACCACATCAAATTCCTCTCCAAAAAACAATAAGAAGCTCATCATGTTGTCAATCCTCGCCGCGGCGTTGATCATCGCCTCCGCCATCTCGGCTGCACTGATCACCGTGGTCCGGTCTCGTGCTTCATCCAACAATTCAAACCTCCTCCATTCCAAACCAACTCAAGCAATCTCCCGTACCTGCAGCAAAACTAGATACCCTTCACTTTGTATCAACTCCCTTCTAGATTTTCCTGGCTCAACATCAGCTTCTGAGCAAGAACTTGTTCATATCTCATTCAATATGACACACCGTCATATTAGCAAAGCACTCTTTGCCTCCTCAGGCCTCTCGTATACAGTCGCAAACCCACGAGTTCGTGCTGCATACGAGGATTGTCTTGAACTAATGGACGAGTCCATGGATGCTATCAGATCATCCATGGACTCGCTAATGACCACATCCTCAACTTTATCCAACGACGACGGAGAATCAAGACAATTCTCCAATGTCGGAGGATCAACTGAGGACGTGATGACATGGCTCAGTGCCGCGTTAACAAACCAAGACACGTGTCTGGAAGGATTCGAAGACACTAGCGGTACCGTTAAGGATCAGATGGTTGGTAACTTAAAAGACTTGTCGGAACTCGTGAGTAATTCGCTCGCGATATTTTCCGCGAGTGGAGATAATGATTTTACTGGAGTGCCGATACAGAACAAGAGAAGATTAATGGGAATGAGCGATATCTCGCGAGAATTTCCAAAATGGCTTAAGAAACGAGATAGGAGATTATTGAGTTTACCGGTATCGGCGATACAAGCCGATATTATCGTTTCAAAGAGTGGTGGTAATGGTACGGTGAAGACAATCACTGAAGCTATTAAGAAAGCACCGGAACATAGTCTCCGTAGATTCATAATCTACGTGAGGGCTGGAAGGTATGAAGAGAATAATTTAAAGGTGGGGAAGAAGAAAACTAATATTATGTTTATAGGAGATGGGAGGGACAAAACTGTCATCACAGGGAAAAGAAGTGTTGGAGATGGCATGACCACTTTCCATACTGCTTCCTTTGCTGCTAGTGGTCCTGGGTTCATGGCACGTGACATTACGTTCGAGAACTACGCCGGACCGGAGAAGCACCAAGCGGTGGCCCTCCGTGTCGGATCCGATCATGCAGTGGTGTACCGCTGCAATATTGTTGGTTATCAAGACGCATGCTATGTACATTCCAACCGTCAATTTTTCCGTGAATGCAACATTTATGGCACGGTAGATTTTATATTTGGAAATGCAGCAGTAGTTTTTCAAAAATGTAACATTTATGCACGTAAGCCTATGGCCCAACAAAAGAACACTATCACAGCCCAAAATAGAAAAGACCCGAATCAAAATACGGGTATATCCATTCATGATTGTCGGATCCTACCTGCCCCGGATCTTGCTTCATCAAAGGGCAGCATTGAAACATATTTGGGTCGTCCATGGAAGATGTATTCTAGGACTGTATATATGTTGTCCTATATGGGTGATCATGTGCATCCACATGGATGGTTGGAATGGAATGGTGACTTTGCTTTAAAAACTTTGTATTATGGGGAGTACATGAATTTTGGGCCGGGTGCGGCTATCGGGCAACGGGTCAAATGGCCCGGATATCGGGTCATTACTTCAACTTTGGAGGCTAATAGATACACCGTGGCCCAATTCATCTCTGGTTCGTCGTGGTTACCGTCCACCGGAGTGGCATTTTTGGCCGGCTTATCCACTTGA 1830 0.4585 MDFGRLGPSDPGGSSRRSTAPLTPSTTSNSSPKNNKKLIMLSILAAALIIASAISAALITVVRSRASSNNSNLLHSKPTQAISRTCSKTRYPSLCINSLLDFPGSTSASEQELVHISFNMTHRHISKALFASSGLSYTVANPRVRAAYEDCLELMDESMDAIRSSMDSLMTTSSTLSNDDGESRQFSNVGGSTEDVMTWLSAALTNQDTCLEGFEDTSGTVKDQMVGNLKDLSELVSNSLAIFSASGDNDFTGVPIQNKRRLMGMSDISREFPKWLKKRDRRLLSLPVSAIQADIIVSKSGGNGTVKTITEAIKKAPEHSLRRFIIYVRAGRYEENNLKVGKKKTNIMFIGDGRDKTVITGKRSVGDGMTTFHTASFAASGPGFMARDITFENYAGPEKHQAVALRVGSDHAVVYRCNIVGYQDACYVHSNRQFFRECNIYGTVDFIFGNAAVVFQKCNIYARKPMAQQKNTITAQNRKDPNQNTGISIHDCRILPAPDLASSKGSIETYLGRPWKMYSRTVYMLSYMGDHVHPHGWLEWNGDFALKTLYYGEYMNFGPGAAIGQRVKWPGYRVITSTLEANRYTVAQFISGSSWLPSTGVAFLAGLST 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00827 609 ProSitePatterns Pectinesterase signature 2. 440 449 IPR033131 -
Mepo4g00827 609 FunFam Pectinesterase 288 607 - -
Mepo4g00827 609 CDD PMEI-like_3 86 245 - -
Mepo4g00827 609 PANTHER PECTINESTERASE 50 597 - -
Mepo4g00827 609 MobiDBLite consensus disorder prediction 1 32 - -
Mepo4g00827 609 MobiDBLite consensus disorder prediction 12 32 - -
Mepo4g00827 609 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 80 244 IPR035513 -
Mepo4g00827 609 SMART PMEI_2 77 242 IPR006501 GO:0004857
Mepo4g00827 609 Pfam Pectinesterase 294 592 IPR000070 GO:0030599|GO:0042545
Mepo4g00827 609 NCBIfam pectinesterase inhibitor domain 54 243 IPR006501 GO:0004857
Mepo4g00827 609 Pfam Plant invertase/pectin methylesterase inhibitor 81 242 IPR006501 GO:0004857
Mepo4g00827 609 SUPERFAMILY Pectin lyase-like 289 606 IPR011050 -
Mepo4g00827 609 Gene3D Invertase/pectin methylesterase inhibitor family protein 79 245 IPR035513 -
Mepo4g00827 609 Gene3D - 288 607 IPR012334 -
Mepo4g00827 609 FunFam Pectinesterase 78 246 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00827 Mepo-Chr4 10819477 10823500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00827 1 608 Carbohydrate Esterase AT5G53370 62.684 0.0 794
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00827 - - gmx:106796002 902.894