Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00774 ATGTGGGAGGTGGGAGGTGTTGGTCCATATGTTGAGTGTTCTGATTCTGTCAACTTTTGTTTTTACTTTGTTCTTGTCACAACCATGAATATAGAAAAGGTAAAACTTGACTTTAATGTAAATGATGTTGCAAAAAAAGCAACATACAAGAAAAGGAAGAATGGTTTATTCGATAAGGCAGATGAACTAAGTATCCTTTATAGAATTGAAGGTTATGCTAAAGTTTATGGCCGTTATGAACCCCAACCTGAGATTTTTCCATCACCAGGGGAAGTCCAGAGTACTCTTAAAATTCAAGACTATGACTGA 309 0.3592 MWEVGGVGPYVECSDSVNFCFYFVLVTTMNIEKVKLDFNVNDVAKKATYKKRKNGLFDKADELSILYRIEGYAKVYGRYEPQPEIFPSPGEVQSTLKIQDYD 102
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00774 102 PRINTS MADS domain signature 51 66 IPR002100 GO:0003677|GO:0046983
Mepo4g00774 102 PRINTS MADS domain signature 31 51 IPR002100 GO:0003677|GO:0046983
Mepo4g00774 102 SMART madsneu2 29 88 IPR002100 GO:0003677|GO:0046983
Mepo4g00774 102 Gene3D - 42 101 IPR036879 GO:0003677|GO:0046983
Mepo4g00774 102 SUPERFAMILY SRF-like 29 92 IPR036879 GO:0003677|GO:0046983
Mepo4g00774 102 ProSiteProfiles MADS-box domain profile. 29 66 IPR002100 GO:0003677|GO:0046983
Mepo4g00774 102 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 41 70 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00774 Mepo-Chr4 10185914 10186222 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00774 29 97 Type I MADS-box Gene Family AT3G05860 39.130 4.19e-11 55.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mepo4g00774 SRF-TF 3.2e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00774 - - psat:127080453 74.7146