Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00752 ATGTCTCGTGTGTACGTGGGTAATCTGGATTCCAGAGTGTCAGAAAGGGACCTTGAGGATGAATTTCGTGTTTTTGGTGTAATTCGAAGTGTTTGGGTTGCTCGAAGACCACCTGGCTATGCTTTTATTGACTTTGATGACCGCAGAGATGCACAGGATGCTATACGCGATCTAGATGGCAAGAATGGATGGAGGGTAGAGCTTTCTCACAATTCTAGAAGTGGTGGTGGTGGCGGCGGCGGCGGAGGCGGTGGAGGTCGTGGTCGCGGTGGTGGTGGCGGCGGTGGTTCTGATTTGAAGTGTTACGAGTGTGGTGAACCTGGCCATTTTGCTCGTGAATGTCGCAATCGTGGTGGTGGTGGTGCAGGAAGACGCCGTAGCCGCAGTCCACCTCGATTTCGCAGGAGTCCAAGTTATGGTCGAAGGAGTTACAGTCCTCGTGGGCGCTCCCCCAGGCGCCGCAGTGTGTCACCTCGTGGACGTAGCTACAGCAGGTCACCGCCTCCTTACCGTGGGCGTGAGGAGGTGCCATATGCTAATGGAAATGGTGTTAGGGACCGACGCCGAAGCAGAAGTTAA 579 0.5475 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRDLDGKNGWRVELSHNSRSGGGGGGGGGGGGRGRGGGGGGGSDLKCYECGEPGHFARECRNRGGGGAGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSVSPRGRSYSRSPPPYRGREEVPYANGNGVRDRRRSRS 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00752 192 SUPERFAMILY RNA-binding domain, RBD 3 95 IPR035979 GO:0003676
Mepo4g00752 192 Gene3D - 100 158 - -
Mepo4g00752 192 SMART rrm1_1 3 69 IPR000504 GO:0003723
Mepo4g00752 192 CDD RRM_SRSF3_like 3 71 - -
Mepo4g00752 192 FunFam serine/arginine-rich splicing factor RSZ22-like 1 99 - -
Mepo4g00752 192 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 170 - -
Mepo4g00752 192 SUPERFAMILY Retrovirus zinc finger-like domains 83 121 IPR036875 GO:0003676|GO:0008270
Mepo4g00752 192 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Mepo4g00752 192 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Mepo4g00752 192 Pfam Zinc knuckle 100 115 IPR001878 GO:0003676|GO:0008270
Mepo4g00752 192 ProSiteProfiles Zinc finger CCHC-type profile. 100 116 IPR001878 GO:0003676|GO:0008270
Mepo4g00752 192 Gene3D - 1 99 IPR012677 -
Mepo4g00752 192 SMART c2hcfinal6 100 116 IPR001878 GO:0003676|GO:0008270
Mepo4g00752 192 MobiDBLite consensus disorder prediction 66 192 - -
Mepo4g00752 192 FunFam Serine/arginine-rich splicing factor RSZ22A 97 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00752 Mepo-Chr4 9982957 9986924 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00752 2 60 Eukaryotic Initiation Factors Gene Family AT2G36660 38.095 2.80e-06 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00752 K12896 - sspl:121745482 208.379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00752 4 9982957 9986924 Mepo4g00752 4 9982957 9986924 ECH