Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00740 ATGGATGATCGTTCTAGCAAAAGAGGCATTAATGGTAATTCCAGAGATACTTCCAATACCAGAGATCGAAACGATCAAACTTGCAGACGAGCGGGTTGCAGTAGTACAGCAAACCCTCCTAAGGTTGCTCAAGTCAGATATGTTGAAAAAGGTAAATCGTTAAGGCAATCAGTACCGTCAACTTCAAGTGGCAAGGAGGTAATTGGTAGTTCCCGTAGAACAGCTACTAACACAGCAAAACCACTTATAAAACCTCGGAGAACAGTAACTTCAAGTGGGCTTCAAGCTGAAAAGGAAGGGACAGAGTCAACAAAAGCGACTTTGATGGAAGTAGGAAAATCTAGTGGAATTTCAAATTTAAGATCTCAAAGGAATTTTAACCAAAGACCTGTATTGCGTCAACGAGAAAACGAAAGCATTGGTGCGGTGACACAAGCTGCTTCTAGCAAGTATGGATTGAGGAACCTCAGATGCAACACTGTATCCGATGTCATCCCTTCTTGCTCATCATCAGATTCTACAGTTAATACAAGGAAGACTACTGTGATAAAAAAGAGAATCTCTGAAGGGGGAAGTAGCTCCACTGGTAAAGGGAAGAAGATGACTGCGCCTTCATCGGAAGGATTGAATTTTGGCTCCAGAAAGGGCATATCTATATCTGATGCAAGAGGATCTAGAAACATTCCTCCTCGTAGGGACAATAGCAGAGCATCAGTTAGAACTGTAAGATCAGTTAGTGGTTATGCCAGGGGGAGATTTTCTAGTCAAGGAAATGAAAACCCCAGGGTGACCAATAAGTCTCCTGTCGTATCCCCTATTTCGCCTCATTCTATTGATCTTAATTCTCCCGTCACTGAGGAGTTATATGATATGATGCCTATTTCTCCTGAAGAATATGACATCCCACATTCTCTAATAATTCAGGATGGCTCTCGGCGCTACAATGTGGATGATATGTCAGAGGTATTATTGGCACTTGAGAGACTTGAACAAGATGAAGAGTTAACCCAAGAGCAAATTCATTTACTAGAGACCAACTTGTATCTTCGTGAACTTAACATCTATGATCACCATAGAGACATGCGGTTGGATATTGACAACATGTCATACGAGGAACTCTTAGCTCTCGAAGAGAGGATGGGTACCGTGAGCACAGCTCTAACAGAGGAAGCACTTTCAGATAGTCTTAAAAGAAGTATCTATCAGTCTGCGCCTTCAGATGATGCAGCTGACTGTGTTAATGAGGATAAGGATGATACCAAATGCTGCATTTGCCAGGAAGAATATGTTGCTGGAGATGAAGTTGGAAGACTGCAATGCACGCATAAATTTCATGTGATTTGTATAGAGGGCTGGTTGAGGCTGAAGAACTGGTGCCCTTTTTGCAAAGAGTCAGCAGCACTGTCCAAGTCATCTTCATCTCCTTAA 1428 0.4223 MDDRSSKRGINGNSRDTSNTRDRNDQTCRRAGCSSTANPPKVAQVRYVEKGKSLRQSVPSTSSGKEVIGSSRRTATNTAKPLIKPRRTVTSSGLQAEKEGTESTKATLMEVGKSSGISNLRSQRNFNQRPVLRQRENESIGAVTQAASSKYGLRNLRCNTVSDVIPSCSSSDSTVNTRKTTVIKKRISEGGSSSTGKGKKMTAPSSEGLNFGSRKGISISDARGSRNIPPRRDNSRASVRTVRSVSGYARGRFSSQGNENPRVTNKSPVVSPISPHSIDLNSPVTEELYDMMPISPEEYDIPHSLIIQDGSRRYNVDDMSEVLLALERLEQDEELTQEQIHLLETNLYLRELNIYDHHRDMRLDIDNMSYEELLALEERMGTVSTALTEEALSDSLKRSIYQSAPSDDAADCVNEDKDDTKCCICQEEYVAGDEVGRLQCTHKFHVICIEGWLRLKNWCPFCKESAALSKSSSSP 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00740 475 MobiDBLite consensus disorder prediction 181 278 - -
Mepo4g00740 475 FunFam E3 ubiquitin-protein ligase arkadia 384 468 - -
Mepo4g00740 475 MobiDBLite consensus disorder prediction 54 76 - -
Mepo4g00740 475 ProSiteProfiles Zinc finger RING-type profile. 422 463 IPR001841 -
Mepo4g00740 475 Pfam Ring finger domain 421 463 IPR001841 -
Mepo4g00740 475 MobiDBLite consensus disorder prediction 231 278 - -
Mepo4g00740 475 MobiDBLite consensus disorder prediction 1 76 - -
Mepo4g00740 475 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 59 467 IPR045191 GO:0061630
Mepo4g00740 475 SMART ring_2 422 462 IPR001841 -
Mepo4g00740 475 Coils Coil 319 346 - -
Mepo4g00740 475 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 382 467 IPR013083 -
Mepo4g00740 475 SUPERFAMILY RING/U-box 417 466 - -
Mepo4g00740 475 MobiDBLite consensus disorder prediction 181 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00740 Mepo-Chr4 9864530 9869370 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00740 306 466 C3H Transcription Factor Family AT2G15530 41.615 1.08e-36 141
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00740 - - tpra:123907431 634.024
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00740 4 9864530 9869370 Mepo4g00740 4 9864530 9869370 ECH
Mepo4g00740 4 9864530 9869370 Mepo3g07525 3 88593742 88596385 PCT