Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00699 ATGATTTGCTCAAGAGGGGTATTTATTACTGGAATAAGACCGTTGAATGTGCTATACAAGGAAAAAAAAAATAATGATATCAACGTAGATTTTAAGCATAGACACGACATGCCTCGACACCAAGTCAAACAGGTGATATGTTCACTTTGTGGCGTTGAACAAGAGGCGCAGCAAAATTGCGTTAATTGTGGTGTTTGCATGGGCAGGTACTTTTGTGATACATGCAAGCTCTACGACGATGATATATCTAAGCAGCAGTACCATTGTAATGGCTGTGGAATTTGCAGAACTGGTGGACAAGAGAATTTCTTCCATTGTAATAAGTGTGGTTGTTGCTACTCAACTCTGCTGAGAGAGAGTCACCCCTGTGTGGAAGGAGCAATGCATCATGATTGCCCTGTTTGTTTTGAGTATTTGTTTGAATCAAGAAATGATGTCATTGTTATGCCGTGCGGACATACAATCCATAAAAGCTGTCTGAATGAAATGAGAGAACATTTCCAGTTCGCATGCCCTCTCTGTTCAAAGTCGGTCTGTGATATGTCAAAGGTTTGGGAGAAATTGGACATGGAGATTGCTGCTACACCAATGCCTGAGCCATATCAAAACAAAATGGTTTGGATCCTGTGCAATGATTGTGGAAGAACCTCTAATGTCCGGTTCCATTTTGTAGCGCAAAAATGCCTCAACTGCAATTCCTACAACACACGACAGACAAGAGGCTGA 726 0.4146 MICSRGVFITGIRPLNVLYKEKKNNDINVDFKHRHDMPRHQVKQVICSLCGVEQEAQQNCVNCGVCMGRYFCDTCKLYDDDISKQQYHCNGCGICRTGGQENFFHCNKCGCCYSTLLRESHPCVEGAMHHDCPVCFEYLFESRNDVIVMPCGHTIHKSCLNEMREHFQFACPLCSKSVCDMSKVWEKLDMEIAATPMPEPYQNKMVWILCNDCGRTSNVRFHFVAQKCLNCNSYNTRQTRG 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00699 241 Pfam CHY zinc finger 33 77 IPR008913 GO:0008270
Mepo4g00699 241 SUPERFAMILY Zinc hairpin stack 68 125 IPR037275 -
Mepo4g00699 241 ProSiteProfiles Zinc finger CTCHY-type profile. 67 131 IPR017921 -
Mepo4g00699 241 ProSiteProfiles Zinc finger RING-type profile. 132 175 IPR001841 -
Mepo4g00699 241 Gene3D - 203 241 - -
Mepo4g00699 241 SUPERFAMILY RING/U-box 131 180 - -
Mepo4g00699 241 CDD RING-H2_Pirh2-like 131 175 - -
Mepo4g00699 241 Pfam Zinc-ribbon 179 237 IPR039512 -
Mepo4g00699 241 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 28 240 - -
Mepo4g00699 241 SUPERFAMILY CHY zinc finger-like 33 67 IPR037274 GO:0008270
Mepo4g00699 241 SMART ring_2 132 174 IPR001841 -
Mepo4g00699 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 127 193 IPR013083 -
Mepo4g00699 241 Pfam Ring finger domain 131 174 IPR001841 -
Mepo4g00699 241 ProSiteProfiles Zinc finger CHY-type profile. 1 65 IPR008913 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00699 Mepo-Chr4 9460069 9463729 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00699 35 237 C2H2 Transcription Factor Family AT3G18290 39.234 1.68e-40 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00699 K10144 - gmx:100803569 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00699 4 9460069 9463729 Mepo3g07498 3 88316344 88320486 PCT