Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00668 ATGTCTCAGACTAACTGGGAGGCTGATAAGATGTTGGATGTTTACATCCATGATTACCTTGTGAAGAGGGATTTGAAAGCTTCTGCTCAGGCTTTTCAAGCTGAAGGGAAAGTGTCTTCTGATCCTGTTGCTATTGATGCTCCGGGAGGATTTTTGTTTGAGTGGTGGTCAGTTTTCTGGGACATATTCATTGCCAGGACGAACGAGAAGCACTCGGAAGTTGCCGCGTCTTATATTGAGACACAGTTAATTAAGGCCAGGGAGCAGCAGCAGCAACAGCAGCAGCAGCCACAACCTCAGCAATCACCACATCAACAGCAGCAGCAGCAGCAACAACAACAACAACATCAGATGCAGATGCAACAGATGCTGTTACAGAGGCAACACCAGCAGCAACAGCAGCAACAGCAACAACAGCAACAACAGCAGCAGCAGCAGCAGCAGCCGCAACATCAGCAGCAACAGCAGCAACAGCAACAGCAACAACAGGGTAGGGATAGGGCTCATCTCTTAAATGGTGGTGGTGCAAATGGATTAGTTGGAAACCCTAGCACTGCAAATGCTATAGCAACAAAGATGTATGAGGAAAGGTTAAAACTTCCCCTTCAAAGGGATTCTTTGGAAGATGCTGCAATGAAGCAAAGATTTGGTGACCAACTCTTGGATCCAAATCATGCTTCAATATTGAAGTCTTCTGCAGCTACTGGCCAGCCATCGGGGCAAGTTTTGCATGGTGCTGCTGGTGCGATGTCTCCACAAGTTCAAGCTCGTAGTCAGCAACTACCAGGGTCTACTCCGGATATAAAAACTGAGATCAATCCTGTATTGAATCCCAGAGCTGCGGGTCCTGAAGGATCATTGATGGCAATTCCTGGATCAAATCAAGGTGGCAACAATTTGACTCTGAAAGGGTGGCCACTCACAGGTTTGGAGCATCTTCGTTCTGGTTTACTCCAGCAACAAAAACCTTTCATACAGAGTCCACAGCCTTTTCATCAACTTCCAATGTTGACACAACAACATCAGCAACAACTTATGTTAGCTCAGCAAAACCTGGCATCACCTTCTGCCAGTGATGATAGTAGAAGACTCAGAATGCTACTGAATACTCGAAATATGGGCGTAGGTAAGGATGGCCTTTCAAATCCTGTTGGTGATGTAGTATCAAATGTTGGATCGCCCCTCCAAGCAGGTGGTCCTCCATTTCCTCGTGGGGATACAGATATGCTAATGAAGTTGAAACTTGCTCAGTTACAACATCAACAACAGCAGAATGCCAATCCACAACAGCAGCAACTTCAACAACAGCATTCTCTTTCAAATCAGCAATCTCAGTCTGCAAATCATAACATGCATCAGCAAGATAATAAAGTAGGGGGAGGTGGTGGCAGTGTCACTGGAGATGGTAGCATGTCAAACTCCTTTAGAGGAAATGATCAGGTTTCCAAAAGCCAGCCTGGAAGAAAGAGAAAGCAGCCTGTATCTTCTTCTGGTCCTGCCAATAGCTCAGGAACGGCTAATACAGCAGGACCATCTCCGAGTTCAGCACCCTCAACTCCCTCAGGCTCAACTCACACGCCTGGTGATGTGATATCAATGCCTTCTTTACCTCATAATGGTAGTTCTTCTAAGCCATTAATGATGTTTAGCACTGATGGCAATACCTCACCTTCAAACCAATTGGCAGATGTGGACCGCTTTGTAGCAGATGGATCTCTCGATGACAATGTTGAGTCTTTTTTATCACATGATGATACAGACCCTAGAGATCCAGTTGGACGTATGGATGTAAGCAAAGGTTTCACATTTTCTGAAGTAAATTCGGTTCGTGCAAGCACAAATAAAGTTGTTTGTAGCCATTTCTCATCCGACGGAAAATTGCTTGCAAGTGGTGGTCATGACAAAAAGGTTGTTTTATGGTACACAGATTCTCTAAAGCAGAAAGCTACCCTTGAAGAACATTCACTTTTAATCACTGATGTCCGTTTCAGTCCAAGCATGCCTCGTCTTGCAACATCTTCACACGACAAAACTGTCCGGGTTTGGGATGTTGACAATCCTGGGTATTCGCTTCGTACCTTCACTGGGCATTCTGCAGCTGTTATGTCACTAGACTTTCATCCTAATAAAGATGACCTTATCTGCTCTTGTGATTTTGATGGCGAGATAAGATATTGGAGTATTAACAATGGCAGTTGTGCTAGAGTGTCAAAGGGTGGCATGGCACAGATGAGATTTCAACCTCGGTTAGGGAGATTCCTTGCTGCAGCTGCAGATAACGTTGTCTCTATACTTGATGTTGAGACACAAGCATGCCGATATTCTCTAAAGGGTCACACAAAGTTAATACATTCTGTTTGTTGGGATCCTTCTGGAGAGTTCCTGGCATCTGTCAGTGAGGACTCTGTCAGGGTTTGGACTCTTGGATCTGGGAGTGAAGGGGAATGTGTTCATGAGCTTAGCTGTAACGGAAATAAGTTTCACTCGTGCGTTTTTCATCCAACGTATTCTTCACTGTTGGTCATTGGCTGTTACCAGTCATTGGAGCTGTGGAACATGACCGAGAACAAGACAATGACTCTGTCTGCTCACGACGGTCTTATTGCTGCACTGGCTGTATCAACTGTAAACGGTTTGGTCGCTTCTGCCAGTCATGACAGGTTTGTCAAGCTCTGGAAGTGA 2682 0.4523 MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQPQPQQSPHQQQQQQQQQQQHQMQMQQMLLQRQHQQQQQQQQQQQQQQQQQQQPQHQQQQQQQQQQQQGRDRAHLLNGGGANGLVGNPSTANAIATKMYEERLKLPLQRDSLEDAAMKQRFGDQLLDPNHASILKSSAATGQPSGQVLHGAAGAMSPQVQARSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMAIPGSNQGGNNLTLKGWPLTGLEHLRSGLLQQQKPFIQSPQPFHQLPMLTQQHQQQLMLAQQNLASPSASDDSRRLRMLLNTRNMGVGKDGLSNPVGDVVSNVGSPLQAGGPPFPRGDTDMLMKLKLAQLQHQQQQNANPQQQQLQQQHSLSNQQSQSANHNMHQQDNKVGGGGGSVTGDGSMSNSFRGNDQVSKSQPGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSGSTHTPGDVISMPSLPHNGSSSKPLMMFSTDGNTSPSNQLADVDRFVADGSLDDNVESFLSHDDTDPRDPVGRMDVSKGFTFSEVNSVRASTNKVVCSHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSLLITDVRFSPSMPRLATSSHDKTVRVWDVDNPGYSLRTFTGHSAAVMSLDFHPNKDDLICSCDFDGEIRYWSINNGSCARVSKGGMAQMRFQPRLGRFLAAAADNVVSILDVETQACRYSLKGHTKLIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMTENKTMTLSAHDGLIAALAVSTVNGLVASASHDRFVKLWK 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00668 893 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 861 893 - -
Mepo4g00668 893 ProSiteProfiles Trp-Asp (WD) repeats profile. 609 650 IPR001680 GO:0005515
Mepo4g00668 893 ProSitePatterns Trp-Asp (WD) repeats signature. 670 684 IPR019775 -
Mepo4g00668 893 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 651 686 - -
Mepo4g00668 893 MobiDBLite consensus disorder prediction 89 126 - -
Mepo4g00668 893 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 694 732 - -
Mepo4g00668 893 Gene3D - 739 893 IPR015943 GO:0005515
Mepo4g00668 893 MobiDBLite consensus disorder prediction 149 184 - -
Mepo4g00668 893 Gene3D - 592 738 IPR015943 GO:0005515
Mepo4g00668 893 SMART WD40_4 813 852 IPR001680 GO:0005515
Mepo4g00668 893 SMART WD40_4 644 683 IPR001680 GO:0005515
Mepo4g00668 893 SMART WD40_4 854 893 IPR001680 GO:0005515
Mepo4g00668 893 SMART WD40_4 687 727 IPR001680 GO:0005515
Mepo4g00668 893 SMART WD40_4 769 807 IPR001680 GO:0005515
Mepo4g00668 893 SMART WD40_4 730 766 IPR001680 GO:0005515
Mepo4g00668 893 SMART WD40_4 602 641 IPR001680 GO:0005515
Mepo4g00668 893 ProSiteProfiles Trp-Asp (WD) repeats profile. 694 736 IPR001680 GO:0005515
Mepo4g00668 893 ProSiteProfiles Trp-Asp (WD) repeats profile. 776 816 IPR001680 GO:0005515
Mepo4g00668 893 ProSiteProfiles Trp-Asp (WD) repeats profile. 651 686 IPR001680 GO:0005515
Mepo4g00668 893 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 609 640 - -
Mepo4g00668 893 SMART Lish 8 40 IPR006594 GO:0005515
Mepo4g00668 893 MobiDBLite consensus disorder prediction 149 167 - -
Mepo4g00668 893 Coils Coil 120 147 - -
Mepo4g00668 893 SUPERFAMILY WD40 repeat-like 603 893 IPR036322 GO:0005515
Mepo4g00668 893 CDD WD40 605 893 - -
Mepo4g00668 893 MobiDBLite consensus disorder prediction 416 557 - -
Mepo4g00668 893 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Mepo4g00668 893 Pfam LisH 10 36 IPR006594 GO:0005515
Mepo4g00668 893 PRINTS G protein beta WD-40 repeat signature 670 684 IPR020472 -
Mepo4g00668 893 PRINTS G protein beta WD-40 repeat signature 880 893 IPR020472 -
Mepo4g00668 893 PRINTS G protein beta WD-40 repeat signature 628 642 IPR020472 -
Mepo4g00668 893 FunFam Transcriptional corepressor LEUNIG 737 893 - -
Mepo4g00668 893 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 893 - -
Mepo4g00668 893 Pfam WD domain, G-beta repeat 772 806 IPR001680 GO:0005515
Mepo4g00668 893 Pfam WD domain, G-beta repeat 607 640 IPR001680 GO:0005515
Mepo4g00668 893 Pfam WD domain, G-beta repeat 649 683 IPR001680 GO:0005515
Mepo4g00668 893 Pfam WD domain, G-beta repeat 690 727 IPR001680 GO:0005515
Mepo4g00668 893 Pfam WD domain, G-beta repeat 856 893 IPR001680 GO:0005515
Mepo4g00668 893 MobiDBLite consensus disorder prediction 375 557 - -
Mepo4g00668 893 ProSiteProfiles Trp-Asp (WD) repeats profile. 861 893 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00668 Mepo-Chr4 8996305 9006851 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00668 688 892 Miscellaneous Gene Families AT5G08390 25.714 2.07e-13 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Mepo4g00668 WD40 0.042 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00668 - - gmx:100779972 1204.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00668 4 8996305 9006851 Mepo3g07471 3 88052914 88060509 PCT