Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00640 ATGGGTGAAACAAAGGAAGAAACTTACGAGGAAGAGCTTCTAGATTACGAGGAAGAAGATGAGAAAGCACCTGATTCAGTTGGAACTAAAGTTAACGGTGAATCTGGGAAGAAGGGCTATGTTGGGATCCACAGTTCAGGATTCAGAGACTTTCTTCTAAAGCCAGAGCTTCTTCGGGCTATTGTGGACTCAGGATTCGAGCATCCCTCTGAAGTGCAACATGAGTGCATACCTCAAGCAATCCTTGGAATGGATGTATTATGCCAAGCAAAATCGGGAATGGGAAAAACTGCAGTTTTTGTTCTATCAACTTTGCAGCAGATTGATCCTGTTCCAGGCCAAGTTTCTGCTCTTATTCTATGTCATACAAGGGAATTAGCATACCAGATATGCCATGAGTTTGAAAGGTTCAGCACCTACTTGGCTGATCTCAAGGTTGCTGTCTTTTATGGTGGTGTCAACATTAAAGTTCACAAGGATCTATTGAAAAATGAATGCCCTCATATTGTCGTTGGTACACCTGGAAGAATACTAGCATTGGCCAGGGATAAGGACCTTTCATTAAAGAATGTTAGGCATTTCATTTTGGATGAATGTGATAAGATGCTGGAATCACTGGACATGAGGAAAGATGTGCAAGATATTTTCAAGATGACTCCCCATGATAAGCAAGTTATGATGTTTTCTGCAACACTCAGCAAGGAAATTCGTCCAGTCTGCAAAAAATTTATGCAAGATCCAATGGAAATTTATGTTGATGACGAAGCAAAGTTGACCCTCCATGGTCTCGTTCAGCACTACATCAAATTGAAGGAGGAGGAGAAGAACCGAAAGTTGAATGATCTTCTTGATGCACTGGACTTCAATCAAGTTGTCATCTTTGTGAAAAGTGTCAGCAGAGCTGCTGAGCTGGACAAATTGCTTGTGGAATGCAACTTTCCATCCATATGCATTCATTCTGGAATGTCCCAGGAAGAAAGGTTGAAGCGATATAAAGGCTTTAAGGAGGGGCATACAAGGATTCTTGTAGCAACAGATTTAGTTGGCAGGGGAATTGACATTGAACGTGTGAATATCGTGATAAACTATGACATGCCTGACTCTGCAGACACATACTTGCACAGGGTTGGCCGAGCTGGAAGGTTTGGCACCAAGGGCCTTGCAATAACATTCGTTTCATGTTCAAGCGATGTTGATGTTCTCAACAATGTTCAGTCCCGGTTCGAGGTGGATATAAAGCAGCTTCCCGAGCAGATTGATACATCTACCTACAGTATGTTCTTCCTTGTCATTTCATTCGACTTCGTTTTTTTAGGCACATTCATTCTCTATTTTATTATTGTTATCTAA 1350 0.4148 MGETKEETYEEELLDYEEEDEKAPDSVGTKVNGESGKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVPGQVSALILCHTRELAYQICHEFERFSTYLADLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSSDVDVLNNVQSRFEVDIKQLPEQIDTSTYSMFFLVISFDFVFLGTFILYFIIVI 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00640 449 Gene3D - 42 258 IPR027417 -
Mepo4g00640 449 CDD DEADc_DDX39 45 252 - -
Mepo4g00640 449 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 115 396 IPR027417 -
Mepo4g00640 449 FunFam DEAD-box ATP-dependent RNA helicase 56-like 34 252 - -
Mepo4g00640 449 Pfam Helicase conserved C-terminal domain 276 383 IPR001650 -
Mepo4g00640 449 MobiDBLite consensus disorder prediction 1 22 - -
Mepo4g00640 449 SMART helicmild6 302 383 IPR001650 -
Mepo4g00640 449 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 46 74 IPR014014 GO:0003724
Mepo4g00640 449 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 45 402 - -
Mepo4g00640 449 Gene3D - 259 427 IPR027417 -
Mepo4g00640 449 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 262 423 IPR001650 -
Mepo4g00640 449 MobiDBLite consensus disorder prediction 1 31 - -
Mepo4g00640 449 FunFam DEAD-box ATP-dependent RNA helicase 259 427 - -
Mepo4g00640 449 CDD SF2_C_DEAD 263 392 - -
Mepo4g00640 449 SMART ultradead3 65 266 IPR014001 -
Mepo4g00640 449 Pfam DEAD/DEAH box helicase 71 236 IPR011545 GO:0003676|GO:0005524
Mepo4g00640 449 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 77 250 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00640 Mepo-Chr4 8711699 8717905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00640 22 424 Eukaryotic Initiation Factors Gene Family AT5G11200 83.333 0.0 747
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00640 K12812 - gmx:100796232 805.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00640 4 8711699 8717905 Mepo4g00640 4 8711699 8717905 ECH
Mepo3g07442 3 87795155 87800861 Mepo4g00640 4 8711699 8717905 ECH
Mepo4g00640 4 8711699 8717905 Mepo3g07442 3 87795155 87800861 PCT