Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00603 ATGGCTTACCAAAACCAACATCTTTCACAAGAGTTACCAATCCAACATTTCACAGACCAAACCAACAACAATAACAACTCATTCCGTTCCATATTACCAGACTCACCCGACCCTAACTCCAAACCTGACTCCGACCCTAATAACCAACTCCAAACCACACCTAACTGGCTCAACAACGCTATCCTTCGTACCCACTACACCGACAACAACAACAACAACAACAACAATAACAACGACGTTACCAACGACAACACCAACGGTGACGGAGCTTCTAGTTTTCTCAACCTCCAACAAACTTCAGACACCGTGCAAACCACCGGTCAATGGCTTGCACGGTCGATTCTCCACCGTCAACACGGTGAAGTAATCGATAACGTCACCATGGCCAGCGAAGTAGAACACGAATTAGCTAATATGAAAAACGACGGTGAGAGTGACGGACTTGGGGGAAAGAGTGAGGTGGCGGTGGTTGGAGACGGAGGAGGTGGAGGACTGGTGAACTGGCAGATGGGGAGGTGGAAGGCGGAGATTATGGCACATCCGTTGTATGAACAATTGTTGTCGGCACATGTGGCGTGTTTGAGGATAGCAACTCCGGTGGATCAGTTACCGAGGATTGATGCTCAGTTAGCACAGTCTCAGAATGTGGTGGCCAAATACTCTGCGTTTGGTGCTGGAGTAGATGACAAAGAACTTGACCATTTCATGTCACACTATGTTTTATTGTTGTGTTCCTTCAAAGAACAATTGCAACAACATGTCCGCGTCCATGCAATGGAAGCTGTAATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGTCTGACAGGAGTTTCACCCGGAGAAGGTACAGGGGCAACAATGTCTGACGACGAAGATGAACAGGTAGATAGTGACGCAAATCTGTTCGATGGTAGTTTTGATGGTGGTGCTGATAACATGGGATTTGGCCCTCTTATACCAACAGAGAATGAAAGGTCCTTAATGGAGCGCGTAAGACAAGAGCTTAAGCATGAACTGAAACATGGTTACAAGGAGAAAATTGTGGACATAAGAGAGGAAATTTTACGCAAGAGACGAGCTGGGAAACTTCCCGGTGACACAACTTCTGTCCTTAAGGCTTGGTGGCAATCACATTCCAAGTGGCCATATCCAACAGAGGAAGATAAAGCAAGGTTGGTGCAGGAAACTGGTTTGCAACTAAAGCAAATTAATAACTGGTTTATCAATCAAAGGAAGAGGAATTGGCACAGCAATCCTTCAACTTCTACTGTCTTGAAGAGCAAACGCAAAAGGTCTCAAAACTAG 1308 0.458 MAYQNQHLSQELPIQHFTDQTNNNNNSFRSILPDSPDPNSKPDSDPNNQLQTTPNWLNNAILRTHYTDNNNNNNNNNNDVTNDNTNGDGASSFLNLQQTSDTVQTTGQWLARSILHRQHGEVIDNVTMASEVEHELANMKNDGESDGLGGKSEVAVVGDGGGGGLVNWQMGRWKAEIMAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGAGVDDKELDHFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDEQVDSDANLFDGSFDGGADNMGFGPLIPTENERSLMERVRQELKHELKHGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRSQN 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00603 435 CDD homeodomain 358 419 IPR001356 GO:0003677
Mepo4g00603 435 Pfam KNOX1 domain 174 214 IPR005540 GO:0003677|GO:0005634
Mepo4g00603 435 SMART ELK_2 335 356 IPR005539 GO:0003677
Mepo4g00603 435 ProSiteProfiles 'Homeobox' domain profile. 355 418 IPR001356 GO:0003677
Mepo4g00603 435 SMART HOX_1 357 422 IPR001356 GO:0003677
Mepo4g00603 435 Pfam Homeobox KN domain 375 414 IPR008422 GO:0003677|GO:0006355
Mepo4g00603 435 MobiDBLite consensus disorder prediction 413 435 - -
Mepo4g00603 435 MobiDBLite consensus disorder prediction 18 34 - -
Mepo4g00603 435 Gene3D - 356 417 - -
Mepo4g00603 435 MobiDBLite consensus disorder prediction 65 93 - -
Mepo4g00603 435 MobiDBLite consensus disorder prediction 277 296 - -
Mepo4g00603 435 Pfam KNOX2 domain 228 276 IPR005541 GO:0003677|GO:0005634
Mepo4g00603 435 SUPERFAMILY Homeodomain-like 357 420 IPR009057 -
Mepo4g00603 435 SMART KNOX1_2 171 215 IPR005540 GO:0003677|GO:0005634
Mepo4g00603 435 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 123 420 - -
Mepo4g00603 435 Pfam ELK domain 335 356 IPR005539 GO:0003677
Mepo4g00603 435 FunFam homeobox protein knotted-1-like 3 isoform X1 356 417 - -
Mepo4g00603 435 ProSiteProfiles ELK domain profile. 335 355 IPR005539 GO:0003677
Mepo4g00603 435 MobiDBLite consensus disorder prediction 18 53 - -
Mepo4g00603 435 SMART KNOX2_2 222 277 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00603 Mepo-Chr4 8256346 8260545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00603 1 432 Homeobox Transcription Factor Family AT5G25220 65.111 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Mepo4g00603 KNOX2 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00603 - - pvu:PHAVU_009G090500g 600.897