Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00574 ATGAGTAGCTTGGTTGACAGGCTTCGGGTAAGATCTGATCGAAAGCAATTTTATACTCAAGATGAGTCAGACGATGATGCTGATTTAATGCCCAGAAAAAGTCCGACAACTCGGGAAAAGTTTGAAAGGATTGTAAGAAGCGACGCACCTCATTTTTATCTGTTCAACTACTTGATATATGTTGTGCCAAGGGTGCCAGAGCAAGAGTTTCTGAAGGCTTTCAAGATCAATCATCATTTAAAGACCAAAGTAAATAACTTTCATCGTCAAATGGGACCAGTCAGAAAATCGGATGATGACAATTTTGTTGCCATTCGACCTGAATGGACTACGGTTCATCGAATACTTGCTTGCAGGGGCAATGGTGCTGAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTCCTTATGATGAATGCCATTGGGAGCTTGAGTCAGATATCTCTTTGTTCCAAGCAGAAATAGAGAGATTCAATATATTTCGTTCTAGGTCTAGGAAGATTTCTTATAGTAAGCAAAATAGCAGCGTTAGTGATGATGCTGAATTGATAAAGCAGCAGAATGAATTTCAACAGTACGAACATAGCCCCGAATTTCTTTCAGGGGGTAAACTACATCCATATCAACTTGAGGGATTGAACTTCCTACGTTTCTCTTGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATACAAAGTATTGCCTTCTTAGCATCGCTTTTCAAAGAGAATGTTTCTCCACATTTGGTGGTTGCTCCACTTTCTACACTACGAAACTGGGAGCGCGAATTTGAAAGATGGGCACCTCAAATGAATGTTGTTATGTATGTTGGATCTTCCCAAGCTCGTAGCACTATTAGAGAATATGAATTTTACTTTCCGAAGAATCTGAAGAAGAACAAGAAAAAGAATTCAAAAAAAACAGTTACTACAAGAAAGTTGGAAAGCATTAAGTTTGATGTTCTTTTGACATCATATGAGATTATAAACCAAGATACCACATCATTGAAGTCCATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTGAAAAACAAGGATTCAAAATTGTTTTCTTCATTGAAGCAATACTCTAGCAGACATCGTGTGCTTTTGACAGGAACTCCTCTTCAGAATAATCTGGATGAACTGTTTATGCTTATGCACTTCCTTGATGCTGGGAAGTTTGGAAATTTAGAAGAGTTCCAAGAAGAGTTTAAGGATATCAATCAAGAGCAACAAGTTTCGAGGCTTCATACATTGTTGGCCCCACATCTCCTGCGAAGATTGAAGAAGGATGTTATGACTGAACTACCTCCTAAAAAGGAGCTTATTATACGTGTTGAATTGAGCAGCAAACAGAGAGAATATTATAAGGCAATTTTGACTCGTAATTATGAGATATTAACTCGCCGTGGTGGAGCACAAATTTCTCTTAACAATGTTGTTATGGAACTGCGTAAGCTATGTTGTCATCCATACATGTTGGAAGGATTTGAGCCAGTTCTGGACAAAGAAACAGAAGCATATAAACAAATGCTGGAATCATCAGGGAAGTTGCAATTGTTGGACAAGCTGATGATGAAGCTTAAAGAGCAAGGGCATAGAGTCCTTATATTTTCTCAATTTCAGGGCATGCTGAACATGCTTGAAAATTATTGTGTATACAAGCATTGGCAGTATGAAAGGATAGATGGAAATGTTAGTGGAGATGAAAGAGAAGTACGGATAGACCGATTTAATGCTGAAGATTCTTCAAGATTTTGTTTTCTTCTTTCTACTAGAGCTGGTGGATTGGGGATAAACCTTGCAACGGCAGACACAGTTATCATATATGACAGTGATTGGAATCCTCATGCTGATCTACAGGCTATGGCCAGAGCTCATCGAGTTGGACAAACTAACAAGGTGTTAATTTTTAGGCTTATAACACGAGGAACAATTGAAGAAAGGATGATGGAAATAACTAAGAAGAAAATGGTGTTAGAACACGTAGTTGTAGGCAGAAAGGCTCAAAACATTAAACAGGAAGAGTTGGACGACATCATCAGGTATGGCTCAAAGGAGTTATTTGCTGATGAGAATGATGTGGCCGGAAAATCTCGCCAAATTCATTACGACGATGCCGCTATTGACAGATTGTTGGATCGCGACCAAGTTGGAGATGAAGAGGCCACTTTAAATGATGAAGATGAAAGTGGATTTCTGAAAGCCTTTAAGGTGGCAAATTTTGAATATATCAATAAAGTTGAGGCTTCAGAAGGAAAAAACTTTTGGGAGGAATTGCTAAAGGACAAATACCAAGAGCAAAAAGTTGAAGTGCAAAATGCCTTGGGTAAAGGGAAGCGAAACCGGACAACATTACTGGTATGCCACTGTGGGAAGAATTTTGCTCGGCTAGAAGGTGTAGGCTCCTCTGACTACGAGGATGACGATTATGAAGTGGATCATACTGACGGTGATTCAAATTCAACAAGAACTACTACATCCAAAAGACCTTCCAAAAAGACAGCTGCTGCAGATAACACAAATCCACCGCCTTTAATGGAAGGCGAAGGAAGATCGCTAAAAGTTCTTGGTTATACTCAACGTCAGAGAGCTTCTTTCCTTCAGACTTTAATGAGGTTTGGGTTCGGCGATTTTGATTGGAAGGATTTTATTCCCCACATGAAGCAAAAGACTTATGAAGAAATCAATGAGTATGGAATCCTTTTCTTATCTCACATTGCTGAAGATTTAAATGATTCCCCTACATTCTCAGATGGTATTCCAAAAGAAGGACTTCGAATTGATGAAGTACTTGTTAGAATATCGGTTTTGTCATTGATAAGGGAAAAGGTAAAATTTGCATCAGACAATCCTGGCACTCCACTTTTTTCAGACGACATCTTGTCACGATATGCAGGCTTGAGAAGTACAAAGATATGGAAGGAGGAGCATGATTTAGTCTTACTGCATGCAGTTTTGAAGCATGGATATGGAAAGTGGTCAGATATTGTTGATGATAAGGATCTGAATATTCAGAAAGTCATCTGTCAGGAGTTAAATACTCCCTTCATAAATTTACCATCGCTAGGACAAGTTGGCTCTCAAGTGAAAAATGGTGCAAATATGCCAAATCTGGAATCCCCTTTGAACCAGTCTAGGGAGAATAATGGTAGCGCTGCAGCAGTTAATGGAGCACATGGCTCTTGTGGTGCTACGAGCCAAGAAGTGTTGCATCAACTGTCCGATCTATTATTGCAATTTAGAAACATGCAGAGAAGACAAATTGATTTCATAAGAAAGAGGTTTCCTCTCTTGGAAAATTGTCTCAATGATGAATACTGCCAGAAAGAATACTGGCATGCTTCAGAAGAATTATCTATTTCTGCCTGTGACAATGATCCTAATCGGTCAACACTGCCTCATCTTTACAATGAGATGTGCAATGATGCGGCGAAAAATACTGAGGATTTGTTTCATACATCGATGTCCAGAGAACAGACAAAACTAGAAAACATTGTTGGACTTGTCGACAAAATTTTGACACCAAATCAATCCGCTTCTGATAATTGA 3582 0.3908 MSSLVDRLRVRSDRKQFYTQDESDDDADLMPRKSPTTREKFERIVRSDAPHFYLFNYLIYVVPRVPEQEFLKAFKINHHLKTKVNNFHRQMGPVRKSDDDNFVAIRPEWTTVHRILACRGNGAEKEYLVKWKELPYDECHWELESDISLFQAEIERFNIFRSRSRKISYSKQNSSVSDDAELIKQQNEFQQYEHSPEFLSGGKLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFKENVSPHLVVAPLSTLRNWEREFERWAPQMNVVMYVGSSQARSTIREYEFYFPKNLKKNKKKNSKKTVTTRKLESIKFDVLLTSYEIINQDTTSLKSIKWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGNLEEFQEEFKDINQEQQVSRLHTLLAPHLLRRLKKDVMTELPPKKELIIRVELSSKQREYYKAILTRNYEILTRRGGAQISLNNVVMELRKLCCHPYMLEGFEPVLDKETEAYKQMLESSGKLQLLDKLMMKLKEQGHRVLIFSQFQGMLNMLENYCVYKHWQYERIDGNVSGDEREVRIDRFNAEDSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRVGQTNKVLIFRLITRGTIEERMMEITKKKMVLEHVVVGRKAQNIKQEELDDIIRYGSKELFADENDVAGKSRQIHYDDAAIDRLLDRDQVGDEEATLNDEDESGFLKAFKVANFEYINKVEASEGKNFWEELLKDKYQEQKVEVQNALGKGKRNRTTLLVCHCGKNFARLEGVGSSDYEDDDYEVDHTDGDSNSTRTTTSKRPSKKTAAADNTNPPPLMEGEGRSLKVLGYTQRQRASFLQTLMRFGFGDFDWKDFIPHMKQKTYEEINEYGILFLSHIAEDLNDSPTFSDGIPKEGLRIDEVLVRISVLSLIREKVKFASDNPGTPLFSDDILSRYAGLRSTKIWKEEHDLVLLHAVLKHGYGKWSDIVDDKDLNIQKVICQELNTPFINLPSLGQVGSQVKNGANMPNLESPLNQSRENNGSAAAVNGAHGSCGATSQEVLHQLSDLLLQFRNMQRRQIDFIRKRFPLLENCLNDEYCQKEYWHASEELSISACDNDPNRSTLPHLYNEMCNDAAKNTEDLFHTSMSREQTKLENIVGLVDKILTPNQSASDN 1193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00574 1193 Pfam CHD subfamily II, SANT-like domain 836 969 IPR009462 GO:0003677|GO:0006338
Mepo4g00574 1193 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 66 1062 - -
Mepo4g00574 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 439 696 IPR027417 -
Mepo4g00574 1193 Gene3D - 939 1098 - -
Mepo4g00574 1193 SMART helicmild6 556 640 IPR001650 -
Mepo4g00574 1193 Pfam CHDCT2 (NUC038) domain 982 1015 IPR012957 -
Mepo4g00574 1193 Pfam Chromo (CHRromatin Organisation MOdifier) domain 111 158 IPR023780 -
Mepo4g00574 1193 Pfam CHD subfamily II, DUF1087 756 794 IPR009463 -
Mepo4g00574 1193 Pfam SNF2-related domain 224 504 IPR000330 GO:0005524|GO:0140658
Mepo4g00574 1193 CDD SF2_C_SNF 525 651 - -
Mepo4g00574 1193 SMART ultradead3 200 410 IPR014001 -
Mepo4g00574 1193 Gene3D - 102 159 - -
Mepo4g00574 1193 MobiDBLite consensus disorder prediction 816 861 - -
Mepo4g00574 1193 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 437 IPR027417 -
Mepo4g00574 1193 SUPERFAMILY Chromo domain-like 87 158 IPR016197 -
Mepo4g00574 1193 ProSiteProfiles Chromo and chromo shadow domain profile. 110 157 IPR000953 -
Mepo4g00574 1193 MobiDBLite consensus disorder prediction 830 849 - -
Mepo4g00574 1193 Gene3D - 447 671 IPR027417 -
Mepo4g00574 1193 Pfam Helicase conserved C-terminal domain 527 640 IPR001650 -
Mepo4g00574 1193 CDD CD2_tandem 108 157 - -
Mepo4g00574 1193 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 216 402 IPR014001 -
Mepo4g00574 1193 SMART DUF1087_2 741 807 IPR009463 -
Mepo4g00574 1193 Gene3D - 196 446 IPR038718 -
Mepo4g00574 1193 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 530 690 IPR001650 -
Mepo4g00574 1193 SMART chromo_7 108 162 IPR000953 -
Mepo4g00574 1193 SMART DUF1086_2 817 972 IPR009462 GO:0003677|GO:0006338
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00574 Mepo-Chr4 8008145 8020085 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00574 226 700 RAD5 or RAD16-like Gene Family AT1G02670 24.910 1.94e-34 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo4g00574 SNF2_N 9.3e-68 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00574 K11643 - gmx:100790230 1610.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00574 4 8008145 8020085 Mepo3g07388 3 87280923 87299584 PCT