Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00571 ATGAGTAGCTTGGTTGACAGGCTTCGTGTAAGATCTGATCGAAAGCAATTTAATACTCAAGATGAGTCAGACGATGATGCTGATTTAATGCCCAGAAAAAGTCAGAGAACTCGGGAAAAGTTTGAGAGGATTGTAAGAAGCGATGCAATCCTTATACTGTTTAATTTGGCATGGAATCTGGTGCCAGAGGAAGAGTTTCTGAAGGCTTTCAAGCTCAATCATCATTTTAAGACCAAAGTAAACAACTTTCATCGTCAAATGGCAAAAGTCAGAAAACCGGATGAAGATTTTGTTGCCATTCGACCTGAATGGACTACGGTTCATCGAATACTTGCTTGCAGGGGCAATGGTGCTGAGAAGGAATATCTTGTGAAGTGGAAAGAGCTTCCTTATGATGAATGCCATTGGGAGCTTGAGTCAGATATCTCTTTGTTTCAAGCAGAAATAGAGAGATTCAATATATTTCGTTCTAGGTCTAGAAAGATTTCTTATAGTAAGCAAAATAGCAGTGTTAGTGATGATGCTGAATTGATAAAGCAGCAGAATGAATTTCAACAGTATGAACATAGCCCCGAATTTCTTTCAGGGGGTACACTACATCCATATCAACTTGAGGGATTGAACTTCCTACGTTTCTCTTGGTCCAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATACAAAGTATTGCTTTCTTAGCATCCCTTTGCAAAGAGAATGTTTCTCCACATCTGGTGGTTGCTCCACTTTCTACACTACAAAACTGGGAGCGCGAATTTGAAAGATGGGCACCTCAAATGAATGTTGTTATGTATGTTGGATCTTCCCAAGCTCGTAGCACTATTAGAGAATATGAATTTTACTTTCCAAAGAATCCGAAGAAGAACAAGAAAAAGAATTCTGAAAAAACAGTTACTACAAGAAAGTTGGAAAGCATTAAGTTTGATGTTCTTTTGACATCATATGAGATTATAAACCAAGATACCGCATCATTGAAGCCCATAAAGTGGGAGTGCATGATAGTTGATGAAGGTCACCGTCTGAAAAACAAGGATTCAAAATTGTTTTCTTCATTGAAGCAATGCTCTAGCAGACATCGTGTGCTTTTGACAGGAACTCCTCTTCAGAACAATCTGGATGAACTCTTTATGCTTATGCACTTCCTTGATGCTGGGAAGAATCTTCCAAAAGAGTTTGTCAACCAGGCTGGTTTCAAGGAAGATCAGACTCATATTATAGTAGAAGATAACGAGGGAGACGTATTTGAATGCCGTCTAAGATGGTCGAAGGGCTTATTCATAATGGGTAGGTGGAACGAATTCTGCACGGTGAATAATATTAAACCTGGCACCCGCGTGAGGATGTCGGTTGATCCTGCTGATCGTTCCCGAATTTACATCCACGTCATAGTAACCCCTGAATGA 1440 0.3965 MSSLVDRLRVRSDRKQFNTQDESDDDADLMPRKSQRTREKFERIVRSDAILILFNLAWNLVPEEEFLKAFKLNHHFKTKVNNFHRQMAKVRKPDEDFVAIRPEWTTVHRILACRGNGAEKEYLVKWKELPYDECHWELESDISLFQAEIERFNIFRSRSRKISYSKQNSSVSDDAELIKQQNEFQQYEHSPEFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLCKENVSPHLVVAPLSTLQNWEREFERWAPQMNVVMYVGSSQARSTIREYEFYFPKNPKKNKKKNSEKTVTTRKLESIKFDVLLTSYEIINQDTASLKPIKWECMIVDEGHRLKNKDSKLFSSLKQCSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKNLPKEFVNQAGFKEDQTHIIVEDNEGDVFECRLRWSKGLFIMGRWNEFCTVNNIKPGTRVRMSVDPADRSRIYIHVIVTPE 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00571 479 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 61 417 - -
Mepo4g00571 479 Gene3D - 166 428 IPR038718 -
Mepo4g00571 479 CDD CD2_tandem 103 152 - -
Mepo4g00571 479 Gene3D - 95 154 - -
Mepo4g00571 479 ProSiteProfiles Chromo and chromo shadow domain profile. 105 152 IPR000953 -
Mepo4g00571 479 MobiDBLite consensus disorder prediction 15 34 - -
Mepo4g00571 479 Pfam SNF2-related domain 219 398 IPR000330 GO:0005524|GO:0140658
Mepo4g00571 479 Pfam Chromo (CHRromatin Organisation MOdifier) domain 106 153 IPR023780 -
Mepo4g00571 479 SUPERFAMILY DNA-binding pseudobarrel domain 399 474 IPR015300 -
Mepo4g00571 479 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 211 397 IPR014001 -
Mepo4g00571 479 SUPERFAMILY Chromo domain-like 95 153 IPR016197 -
Mepo4g00571 479 SMART chromo_7 103 157 IPR000953 -
Mepo4g00571 479 SMART ultradead3 195 405 IPR014001 -
Mepo4g00571 479 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 407 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00571 Mepo-Chr4 7983179 7988452 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00571 221 393 RAD5 or RAD16-like Gene Family AT1G02670 30.387 8.59e-17 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Mepo4g00571 SNF2_N 1.9e-45 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00571 K11643 - gmx:100804203 548.125