Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00568 ATGGCAAACTATCACCGGAACAACGTCGGAAACCTCGTTCTCGGCCACCACCACCACCACTCTTCAAAACCACCAACATTCTCCCACCACTTCCGTCTCTGGAACTCCCTCTCACTCGCCTCCCTCCGTCGTCTCATCTTCCACGCCGTCAGCTGCGGCGGCGCCACCTCCCGTTACAATCACCGCCGCCGTAGCACTTTCAACGAAGATGACACTGAAGACTTCTCTTCATCAGCAGCTTCTTCCTTCGACAAACGGCAACAGACTCAAACTTCAAAACCGAATGTGAAATCGGAGAAGCTCTCCGATCTTCTTAACATGGCGGAGATGGAGACGGAAGAGGAAGCGAAGAAGAAGGAAGAAGCTCTAGAGAAACTTAAGAAACTTGTGAAGGATTTGCATGAGGAAGATGATTCGGTGAAGCGGCGAGAAGCTGCGTCCACCGTGAGAATGCTCGCTAAGGAGAATTTGGAAGTCAGAGGAACACTGTCGATGCTCGGAGCTATTCCACCGCTAGTCGCAATGCTCGAATCGAAAGACGTTGATTCTCAGATCGCTTCTCTCTATGCATTGCTCAATCTTGGAATCGGAAACGATGCAAATAAAGCAGCCATTGTTAAAGTTGGTTCTGTTCATAAGATGCTTAAGCTTATTGAATCTTCAGATGGTATTGATTCGGCAGTTTCTGAAGCGATTGTTGCGAATTTTCTTGGATTAAGTGCTTTGGATTCGAATAAACCGATAATTGGGTCTTCGGCTGCAATACCCTTTTTAGTTAGAACTCTTCAGAATAAGAATTTAGATAAGAAAAGTAGCAATCAAGTTAAGCAAGATGCTCTTAGAGCACTTTACAATCTTTCAATCTTCCCAGCCAATGTTCAGTTTATTTTGGAAACTGATTTGGTACCGTTTTTGATAAACTCGATTGGAGACATGGGAGTAACTGAAAGAAACCTTTCAATCCTTAGCAATTTGGTATCAACTAGAGCGGGTAGAAAGGCAATAAGTGCTGTCCCGGATGTGTTTCCTATCTTGGTCGATGTATTGAATTGGAATGATTCACCTGAATGCCAGGAGAAGGTTTCGTATGTTTTGATGGTTATGTCGCACAAATCTTATGGTGACAAGCAGGCCATGATAGAGGCAGGGATTGTGTCATCGCTTCTTGAGTTGTCGCTTATTGGTACAACTTTGACTCAGAAACGGGCTTCAAGGCTATTGGAAAGTTTGAGAATAGATAAAGGGAAACAGGTTTCAGAGAACTATAACGGAAATTTAGGCGCAACTGTCTCTGCCCCAATTTGCGGAACTTCGTCGTCGTGTGCAAAACCAGATGGAGGTGGAGGAGGAAAAGAGTGTTCGGAAGAAGATGAAGATATGATGAGCGAAGAGAAGAAAGCAGTGAAGCAATTAGTCCAATTGAATCCAAATGAGAATGGAAGGACTAAACTTAGATCTAGTTTGGCATGGAAAGCTTAG 1479 0.4435 MANYHRNNVGNLVLGHHHHHSSKPPTFSHHFRLWNSLSLASLRRLIFHAVSCGGATSRYNHRRRSTFNEDDTEDFSSSAASSFDKRQQTQTSKPNVKSEKLSDLLNMAEMETEEEAKKKEEALEKLKKLVKDLHEEDDSVKRREAASTVRMLAKENLEVRGTLSMLGAIPPLVAMLESKDVDSQIASLYALLNLGIGNDANKAAIVKVGSVHKMLKLIESSDGIDSAVSEAIVANFLGLSALDSNKPIIGSSAAIPFLVRTLQNKNLDKKSSNQVKQDALRALYNLSIFPANVQFILETDLVPFLINSIGDMGVTERNLSILSNLVSTRAGRKAISAVPDVFPILVDVLNWNDSPECQEKVSYVLMVMSHKSYGDKQAMIEAGIVSSLLELSLIGTTLTQKRASRLLESLRIDKGKQVSENYNGNLGATVSAPICGTSSSCAKPDGGGGGKECSEEDEDMMSEEKKAVKQLVQLNPNENGRTKLRSSLAWKA 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00568 492 Gene3D - 95 269 IPR011989 -
Mepo4g00568 492 SMART arm_5 156 196 IPR000225 GO:0005515
Mepo4g00568 492 SMART arm_5 289 327 IPR000225 GO:0005515
Mepo4g00568 492 SMART arm_5 198 241 IPR000225 GO:0005515
Mepo4g00568 492 SMART arm_5 371 412 IPR000225 GO:0005515
Mepo4g00568 492 SMART arm_5 242 288 IPR000225 GO:0005515
Mepo4g00568 492 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 27 479 - -
Mepo4g00568 492 Gene3D - 270 425 IPR011989 -
Mepo4g00568 492 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 253 287 IPR000225 GO:0005515
Mepo4g00568 492 MobiDBLite consensus disorder prediction 449 466 - -
Mepo4g00568 492 Coils Coil 105 143 - -
Mepo4g00568 492 MobiDBLite consensus disorder prediction 72 99 - -
Mepo4g00568 492 SUPERFAMILY ARM repeat 94 418 IPR016024 -
Mepo4g00568 492 MobiDBLite consensus disorder prediction 63 103 - -
Mepo4g00568 492 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 167 209 IPR000225 GO:0005515
Mepo4g00568 492 Pfam Armadillo/beta-catenin-like repeat 165 194 IPR000225 GO:0005515
Mepo4g00568 492 MobiDBLite consensus disorder prediction 440 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00568 Mepo-Chr4 7926709 7929761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00568 123 417 U-box Gene Family AT1G67530 30.132 2.32e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00568 - - psat:127098188 667.151
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00568 4 7926709 7929761 Mepo3g07385 3 87246337 87248366 PCT