Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00546 ATGGGGATGATCGAACTCAAGCATCAGATTTCAGTAGAAATCAACTGGCAATTTCAATACAGAACAGCATACACAGTATTTCAAGACAGCGTACAAAGAACAATCATAATGGTGTCCACCGGCGTATTCATGGATCTCGAGAACTGTTCCATTCCTCCACAGTTAAGAAGCTATGGATTGATTAAACAAAGAATCAGTGCTTCTCTTCGACTAGGCGGTATACGAGTAGAAGGCGGAATCACTGTGAGAGCATTTGGAAATGTTAAGAAGATAAGCGCTGATGTTCGAAGGCAATTCAAAGCTGCAGATGTTGACTTGATTGATGCGCCTTCCGGCGGAGGTGTAAAAAAAAATGGGTCTGATGTTATGCTTATTAGCAACATGCATTCCTGGTCGCGTGAAAATCCAAACGGAAATATCCTCCTAATCGCGGGTGATAGTGATTATGTCGAAACCTTGAAGTTTATGGAAGAAGGTGGGCATACAGTCATGATCGCCGGGAAGTGGGATGCCTCAGAACTTCTGATGGAATACGGAAAAGTATTGTGGAACTGGCCTAACATAGTCCTTTTAGGGTCCGGGTGTTCTCCCATTTACTATCGAAACCCGGATGAGTCAGACTCAAAGGAGAGATTGGGTCCCATAAATGTTGTTATTCGAATTTTGCAAATTTTACAGCTCGAGCATGTATTTCCTACACTTGAAAACATCAAAGAATGCTATTACGCTAGGGCTGAACTCTATTCCAGGAATAATATAAGTATTGATAATGCGTTGCAATGGGCATGTGACCACAGGAAAGTTATCATTGAGCGTACTCGAGTTCCAAGCCACGGCAATCTTAGTTTGTACAGATTAGCTGACAGCCACCTTGGAATTTGTTCAAACCCTAAGGTTGGGACCAATATTGATTATATAGAAGTGTGGCCACAATTGCAAACTTTTTTTCTCGACAATATTGGTGAAGGAAATCGATTAGAGCCTGGAAAATCCATGTTTGAGTTTGCTGGAATTCTCCGGGGGAAGTTCTTTAATGACTGTAACTTTGGTGAAAGGTTTCTGATCGGTGAGATATTAACTGTAATCCATGTCATGCTGAAGCCTAAACTCAATGGTGGTTTAGAATGGATGGGTAACCGTCCCGAGCAATGGGCTCCAAATTTCAAGATGCGGAATATTAGAAGATATAAAGAGGAAGACATTGTAGGCGTAGCTTCAAGACCTTGA 1227 0.4181 MGMIELKHQISVEINWQFQYRTAYTVFQDSVQRTIIMVSTGVFMDLENCSIPPQLRSYGLIKQRISASLRLGGIRVEGGITVRAFGNVKKISADVRRQFKAADVDLIDAPSGGGVKKNGSDVMLISNMHSWSRENPNGNILLIAGDSDYVETLKFMEEGGHTVMIAGKWDASELLMEYGKVLWNWPNIVLLGSGCSPIYYRNPDESDSKERLGPINVVIRILQILQLEHVFPTLENIKECYYARAELYSRNNISIDNALQWACDHRKVIIERTRVPSHGNLSLYRLADSHLGICSNPKVGTNIDYIEVWPQLQTFFLDNIGEGNRLEPGKSMFEFAGILRGKFFNDCNFGERFLIGEILTVIHVMLKPKLNGGLEWMGNRPEQWAPNFKMRNIRRYKEEDIVGVASRP 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00546 408 CDD PIN_limkain_b1_N_like 40 166 - -
Mepo4g00546 408 Gene3D - 37 184 - -
Mepo4g00546 408 PANTHER LIMKAIN B LKAP 19 237 IPR024768 GO:0005777|GO:0010468
Mepo4g00546 408 Pfam NYN domain 40 169 IPR021139 GO:0004540
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00546 Mepo-Chr4 7750186 7753708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00546 36 198 C2H2 Transcription Factor Family AT5G61190 26.829 1.39e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00546 - - tcc:18611739 86.2705