Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00522 ATGGCTACTAAACTCTGTGATTCCTGCAAGTCATCCAAGGCAACACTATTCTGCCGTTCTGATTCAGCTTTCCTCTGTCTAACTTGTGATTCCAACATCCACGCCGCCAACAAACTTGCCTCCCGCCACCATCGCGTCACACTCTGCCAAGTCTGTGAACAAGCTCCGGCTCACGTCACCTGCAAAGCCGACGCAGCTGTTCTATGTATCTCCTGTGATCATGATATCCACTCTGCTAACCCCCTAGCTCGTCGCCACGAACGTGTCCCTCTCACCACCTTCCACCACCACAACAACAGCCAACAACAATCATCCTTCTCTGAAAATGATCAGGACGCCACCACCGAAGAAGCAGAAGCTGCTTCCTGGCTCCTCCAAACTCCTTCAAACCCTAAATTCCCTGATCTCAATTACTCTCACTACTCGTACCCCGAAATCGATGATTTCGTCACTGTCGACGCTAAAACAGACTTGCCGGAGCAAAACAGTCCCGGCACCACCGCAGATGGCGTCGTTCCGGTGCAGTCGCAGAGCAAAACCGTCACCGAACACGAGCACGAACACTACTCAGATATCAACATCGATTTCTCCAACTCAAAACCTTTCACTTACAATTACAATCATACCGTATCGTCGCCGTCAATGGAGGTTGGAGTTGTACCGGACGGAAACGTGATGACGGAAATATCGTACTGCGGTTACCAAACGACGGCGACGGAGACAGCGCCAATGACGGTGGCGGTTCCGATGACGGCGGTGGAAAGAGAAGCTAGGGTTTTGAGGTACAGAGAGAAGAGAAAGAATAGAAGGTTCGAGAAGACTATTCGTTACGCTTCAAGAAAAGCTTATGCAGAAACTCGACCTAGAATTAAAGGAAGGTTCGCGAAACGTTCGGATTTAAATATGAATTTAATTGCAGAGGATGAATACGGCGTCGTTCCTTCATGTTAA 951 0.4921 MATKLCDSCKSSKATLFCRSDSAFLCLTCDSNIHAANKLASRHHRVTLCQVCEQAPAHVTCKADAAVLCISCDHDIHSANPLARRHERVPLTTFHHHNNSQQQSSFSENDQDATTEEAEAASWLLQTPSNPKFPDLNYSHYSYPEIDDFVTVDAKTDLPEQNSPGTTADGVVPVQSQSKTVTEHEHEHYSDINIDFSNSKPFTYNYNHTVSSPSMEVGVVPDGNVMTEISYCGYQTTATETAPMTVAVPMTAVEREARVLRYREKRKNRRFEKTIRYASRKAYAETRPRIKGRFAKRSDLNMNLIAEDEYGVVPSC 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00522 316 ProSiteProfiles Zinc finger B-box type profile. 44 91 IPR000315 GO:0008270
Mepo4g00522 316 CDD Bbox1_BBX-like 5 48 - -
Mepo4g00522 316 ProSiteProfiles CCT domain profile. 255 297 IPR010402 GO:0005515
Mepo4g00522 316 Pfam CCT motif 255 297 IPR010402 GO:0005515
Mepo4g00522 316 MobiDBLite consensus disorder prediction 96 118 - -
Mepo4g00522 316 ProSiteProfiles Zinc finger B-box type profile. 1 48 IPR000315 GO:0008270
Mepo4g00522 316 SMART bboxneu5 1 48 IPR000315 GO:0008270
Mepo4g00522 316 SMART bboxneu5 49 91 IPR000315 GO:0008270
Mepo4g00522 316 MobiDBLite consensus disorder prediction 96 111 - -
Mepo4g00522 316 CDD Bbox1_BBX-like 48 91 - -
Mepo4g00522 316 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 6 299 IPR045281 GO:0009909
Mepo4g00522 316 Pfam B-box zinc finger 46 91 IPR000315 GO:0008270
Mepo4g00522 316 Pfam B-box zinc finger 4 46 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00522 Mepo-Chr4 7415079 7416708 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00522 1 301 C2C2-CO-like Transcription Factor Family AT5G24930 54.830 5.91e-97 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Mepo4g00522 zf-B_box 1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00522 - - cam:101512206 486.878