Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00483 ATGGCAATGCAAATTAATTTAAAAGACGAGGAGGTTGAGGATGGTGTAGGTGTGGACAAGGAAGAACACAGAGAGACTTTGTGTGGGGCATGTGGAGACAGCTATGCAGCTGATGAGTTCTTGATTTGCAGTGACATTTGTGAGAAATGGTTTCATGGAAAATGCGTCAAGATTACACCGGCAAGGGCTAAGCATATCAAACAGTACAAATGTCCAGCTTGCAGCAACAAGAGAGACTGCCCTTGA 246 0.4431 MAMQINLKDEEVEDGVGVDKEEHRETLCGACGDSYAADEFLICSDICEKWFHGKCVKITPARAKHIKQYKCPACSNKRDCP 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00483 81 ProSiteProfiles Zinc finger PHD-type profile. 25 77 IPR019787 -
Mepo4g00483 81 PANTHER CPG BINDING PROTEIN 8 78 IPR045104 GO:0006355|GO:0042393
Mepo4g00483 81 ProSitePatterns Zinc finger PHD-type signature. 28 74 IPR019786 -
Mepo4g00483 81 CDD PHD_AL_plant 27 77 IPR044104 -
Mepo4g00483 81 SUPERFAMILY FYVE/PHD zinc finger 19 80 IPR011011 -
Mepo4g00483 81 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 76 IPR013083 -
Mepo4g00483 81 SMART PHD_3 27 75 IPR001965 -
Mepo4g00483 81 FunFam PHD finger alfin-like protein 20 76 - -
Mepo4g00483 81 Pfam PHD-finger 28 77 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00483 Mepo-Chr4 6802658 6802903 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00483 23 78 Alfin-like Transcription Factor Family AT3G42790 85.714 4.08e-31 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mepo4g00483 PHD 1.9e-10 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00483 K26274 - gmx:100797908 128.642