Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mepo4g00483 | ATGGCAATGCAAATTAATTTAAAAGACGAGGAGGTTGAGGATGGTGTAGGTGTGGACAAGGAAGAACACAGAGAGACTTTGTGTGGGGCATGTGGAGACAGCTATGCAGCTGATGAGTTCTTGATTTGCAGTGACATTTGTGAGAAATGGTTTCATGGAAAATGCGTCAAGATTACACCGGCAAGGGCTAAGCATATCAAACAGTACAAATGTCCAGCTTGCAGCAACAAGAGAGACTGCCCTTGA | 246 | 0.4431 | MAMQINLKDEEVEDGVGVDKEEHRETLCGACGDSYAADEFLICSDICEKWFHGKCVKITPARAKHIKQYKCPACSNKRDCP | 81 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mepo4g00483 | 81 | ProSiteProfiles | Zinc finger PHD-type profile. | 25 | 77 | IPR019787 | - | |
Mepo4g00483 | 81 | PANTHER | CPG BINDING PROTEIN | 8 | 78 | IPR045104 | GO:0006355|GO:0042393 | |
Mepo4g00483 | 81 | ProSitePatterns | Zinc finger PHD-type signature. | 28 | 74 | IPR019786 | - | |
Mepo4g00483 | 81 | CDD | PHD_AL_plant | 27 | 77 | IPR044104 | - | |
Mepo4g00483 | 81 | SUPERFAMILY | FYVE/PHD zinc finger | 19 | 80 | IPR011011 | - | |
Mepo4g00483 | 81 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 17 | 76 | IPR013083 | - | |
Mepo4g00483 | 81 | SMART | PHD_3 | 27 | 75 | IPR001965 | - | |
Mepo4g00483 | 81 | FunFam | PHD finger alfin-like protein | 20 | 76 | - | - | |
Mepo4g00483 | 81 | Pfam | PHD-finger | 28 | 77 | IPR019787 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mepo4g00483 | Mepo-Chr4 | 6802658 | 6802903 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mepo4g00483 | 23 | 78 | Alfin-like Transcription Factor Family | AT3G42790 | 85.714 | 4.08e-31 | 107 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | Alfin-like | Mepo4g00483 | PHD | 1.9e-10 | CL0390 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mepo4g00483 | K26274 | - | gmx:100797908 | 128.642 |