Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00481 ATGGACGTTGTAGGTGCTCCGTACAATCCTCGTACTGTCGAAGAAGTCTTTCGAGATTTCAAAGGTCGCAGAGCTGCCTTAATTAAAGCCCTCACCACCGATGTCGATGTATTCTACCAGCAGTGTGATCCAGAGAAGGAAAACCTTTGCCTTTATGGATTTCCGAGTGAGCAGTGGGAGGTGAATCTGCCAGCTGAGGAAGTGCCGCCTGAGCTTCCAGAGCCAGCATTGGGTATTAACTTTGCTAGAGATGGAATGCAAGAAAAGGACTGGCTATCTTTGGTTGCCGTACACAGTGATGCTTGGTTACTTTCTGTGGCTTTTTATTTCGGTGCTAGGTTTGGATTTGACAAGGCTGACAGGAAGCGACTATTTAATATGATCAATGATCTTCCAACAATCTTTGAAGCCGTTACAGGGCCGGCCAGGAAACAAGGAAAGGAAAAGTCATCAGTTTCTAATAATAGCAGTACCAAATCCAAATCAAACTCTAAGCGAAGTTCTGAACCTCAGCCAAAGTTTTCAAAACCAATGGCAATGGCTATGCAAATGCAGTCAAAGGACGAGGTTGAGGATGAGGATGGTGTAGGTGTGGACGAGGAAGACGAGGAAGAACACGGAGAGACTTTGTGTGGGGCATGCGGAGACAGCTATGCAGCTGACGAGTTCTGGATTTGCTGTGACATATGTGAGAAATGGTTTCACGGGAAATGTGTGAAGATTACTCCTGCAAGGGCTGAGCATATCAAACAGTACAAATGTCCAGCTTGTAGCAACAAGAGAGCTCGCCCTTGA 795 0.4616 MDVVGAPYNPRTVEEVFRDFKGRRAALIKALTTDVDVFYQQCDPEKENLCLYGFPSEQWEVNLPAEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDAWLLSVAFYFGARFGFDKADRKRLFNMINDLPTIFEAVTGPARKQGKEKSSVSNNSSTKSKSNSKRSSEPQPKFSKPMAMAMQMQSKDEVEDEDGVGVDEEDEEEHGETLCGACGDSYAADEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPACSNKRARP 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00481 264 SMART PHD_3 210 258 IPR001965 -
Mepo4g00481 264 Pfam PHD-finger 211 260 IPR019787 -
Mepo4g00481 264 PANTHER CPG BINDING PROTEIN 9 263 IPR045104 GO:0006355|GO:0042393
Mepo4g00481 264 MobiDBLite consensus disorder prediction 139 204 - -
Mepo4g00481 264 MobiDBLite consensus disorder prediction 146 171 - -
Mepo4g00481 264 SUPERFAMILY FYVE/PHD zinc finger 200 261 IPR011011 -
Mepo4g00481 264 CDD PHD_AL_plant 210 260 IPR044104 -
Mepo4g00481 264 FunFam PHD finger alfin-like protein 203 259 - -
Mepo4g00481 264 Pfam Alfin 12 139 IPR021998 GO:0006355|GO:0042393
Mepo4g00481 264 ProSitePatterns Zinc finger PHD-type signature. 211 257 IPR019786 -
Mepo4g00481 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 259 IPR013083 -
Mepo4g00481 264 ProSiteProfiles Zinc finger PHD-type profile. 208 260 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00481 Mepo-Chr4 6788061 6792618 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00481 1 263 Alfin-like Transcription Factor Family AT3G42790 72.348 1.59e-123 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Mepo4g00481 Alfin 1.4e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00481 K26274 - mnt:21387296 424.861
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00481 4 6788061 6792618 Mepo4g00481 4 6788061 6792618 ECH