Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00477 ATGGGGTGGGGTCACCTTGGAAGAAATGGCTCCGATTCCGTTACCGACGCCGATGCAGCTCCGAGCACCAGCACGGCGCCGGAGTCACGGCGGTTTCCTCCGGCTGCTCAACCGGAAATGATGCGAGCAGCTGAAAAAGACGATCAGTACGCCTCTTTCGTTTACGAAGCCTGTCGTGATGCTTTCCGCCATCTCTTCGGTACTAGAGTTGCGGTGGCTTATCAAAACGAGACGAAGCTTTTAGGGCAAATGCTTTACTATGTTCTCACAACTGGCTCAGGACAACAGACACTTGGTGAGGAATACTGTGATATCACTCAGGTTGCAGGACCTTATGGACTTCCTCCTACACCAGCCAGGCGTGCTTTGTTCATTGTATATCAGTCAGCGATTCCATATATTGCAGAACGAATCAGTTCTAGAATTGCTTCCCGAGGCATTATCCTTTCTGACTATGAGTCTGCTGAGATTTACGGTGAAAATGCCCATGGGAGTAGTAGTTCTCGGGATTCTGAAATTTCTCCTGCATCTGCCTCAGGACAGTCTACATCAACTTTGATGAGGTTGAAGCATAAACTCGGTGGATTTTGGTTGCATATGGTTCAGAGATGGCCTACGATGCTCCCTTTTGTTCGCGAGTTATTGCAGTTGCTTCTTCGTGCTAACCTGATGTTGTTTTATTTTGAAGGCCTATATTATCATATATCCAAACGTGCTGCAGGCATTCGTTATGTGTTCATTGGAAAAGCATCAAATCAAAGACCCAGATATCAAATACTGGGAGTATTTCTGCTGATTCAACTTTGTGTAATAGCTGCTGAAGGGTTGCGTCGAAGAAATTTTTCATCGATTGCTGCTTCAGTTCATCAGGCATCCTTTGCAACCCACCATACATCAGCAGGACATGGTTTGCCTGTTCTAAATGAAGAAGGTAATTTGGCATTTCCAGAAGCTGACAAAGGAAGTTGGGGCTCTGGATCCTCATCTTCTGAGCATCATGCAACTAATGGGGTAAGCAAATGCACGCTTTGCCTGAGTAATCGTCAACACCCAACAGCTACTTCATGTGGCCATGTATTTTGCTGGAACTGTATCACAGAATGGTGCAACGAAAAGCCAGAGTGCCCTCTTTGCCGCACCCCTATAACACACTCAAGTTTAGTCTGTGTCTATCATTCAGACTTCTAG 1188 0.4621 MGWGHLGRNGSDSVTDADAAPSTSTAPESRRFPPAAQPEMMRAAEKDDQYASFVYEACRDAFRHLFGTRVAVAYQNETKLLGQMLYYVLTTGSGQQTLGEEYCDITQVAGPYGLPPTPARRALFIVYQSAIPYIAERISSRIASRGIILSDYESAEIYGENAHGSSSSRDSEISPASASGQSTSTLMRLKHKLGGFWLHMVQRWPTMLPFVRELLQLLLRANLMLFYFEGLYYHISKRAAGIRYVFIGKASNQRPRYQILGVFLLIQLCVIAAEGLRRRNFSSIAASVHQASFATHHTSAGHGLPVLNEEGNLAFPEADKGSWGSGSSSSEHHATNGVSKCTLCLSNRQHPTATSCGHVFCWNCITEWCNEKPECPLCRTPITHSSLVCVYHSDF 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00477 395 Pfam Pex2 / Pex12 amino terminal region 47 278 IPR006845 -
Mepo4g00477 395 SMART ring_2 341 378 IPR001841 -
Mepo4g00477 395 MobiDBLite consensus disorder prediction 15 30 - -
Mepo4g00477 395 MobiDBLite consensus disorder prediction 1 41 - -
Mepo4g00477 395 SUPERFAMILY RING/U-box 340 384 - -
Mepo4g00477 395 ProSitePatterns Zinc finger RING-type signature. 356 365 IPR017907 -
Mepo4g00477 395 FunFam Peroxisome biogenesis factor 10 316 392 - -
Mepo4g00477 395 PANTHER PEROXISOME ASSEMBLY PROTEIN 10 33 393 IPR025654 GO:0005778|GO:0007031|GO:0008270|GO:0016558
Mepo4g00477 395 Pfam Zinc finger, C3HC4 type (RING finger) 340 384 - -
Mepo4g00477 395 MobiDBLite consensus disorder prediction 161 181 - -
Mepo4g00477 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 392 IPR013083 -
Mepo4g00477 395 CDD RING-HC_PEX10 339 390 - -
Mepo4g00477 395 ProSiteProfiles Zinc finger RING-type profile. 341 379 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00477 Mepo-Chr4 6715133 6721691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00477 335 391 C3H Transcription Factor Family AT4G28270 31.507 9.38e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00477 K13346 - gmx:100783914 686.797
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00477 4 6715133 6721691 Mepo4g00477 4 6715133 6721691 ECH