Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00445 ATGATGAAAGGTTTGTCGGTGGATGAAAATATGTCAAATTTGACATCTGCTTCAAGTGAAATAAGTGCTTCTTCAGCAACCAAGAATGGAAAAGCTTCAACAAATCTAGAACCACAACCCAAAAGGAAGAGAAATCTTCCTGGCCACCCAGACCCTGAGGCACAAGTGCTAGCCTTGAGTCCCCAAACTCTCTTAGCAACAAACAGGTTCATTTGTGAGATTTGTAACAAAGGTTTTCAAAGAGATCAAAATCTTCAGCTTCATAAGAGAGGACATAATTTGCCATGGAAGCTAAAGAAAAGAAACGTCAATGAAATTATAAGAAAGAAAGTATATGTTTGTCCAGAGCCAACATGTGTTCACCATGATCCTTCAAGGGCACTTGGTGACCTAACTGGAATCAAGAAGCACTTTTTCAGGAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAATGTTCTAAACGTTATGCAGTTCAGTCGGATTGGAAAGCTCATTCCAAAATTTGTGGCACTAAAGAGTATAAGTGTGACTGTGGAACCCTTTTCTCAAGAAGGGACAGTTTTATCACTCACAGAGCCTTCTGTGATGTTTTATCACAGGAGAGTGCATCAATTTCAGCAGTGAACCCTCTATTCTCTTCTCACTCCCAATTTCATCAAAGCCATGGTTTTCAACCACTATCATTAAAAAAAGAACAAGACTTCAATTTAAGACCAGAAATTCCATTATGGTTACTCCCAACCCATTTGAACCATTTTCAAAACCCTAACCCTACAACTTTGTTTCCTAATAATTCTTTCAACTCCAACAATATAACTACTGCTTCTCCTCACATGTCTGCCACTGCTTTGCTGCAAAAAGCATCACAAATAGGTGTAACGACAGTGAGTAAAACAGAACCTTGTAGACCCCACTTAATGCAAACTCACGTGCCTTCAGAAATGGTTATGCCTTCACGTGAAGAAATAGGAACTACTGGTTTTTCTCATTGTTTGGCTTCTTATGGGAATAAAGCTGCAATAACTTCTGATTGCTTTGAAGAATCTTCTTCTCTTTTGCATGATGTGATGTATGGTAGTGAGAGTTCACATTCACAGTTTGAAGCTGTTACTGCTGCTATGAGCATGAGGGGAATGTTTGATACACAAAGAGATAATAATAACTTTGAGGAACAATATTCCCAATTTGGTAAAAGCAACATTATAAAGAATGGTGGTGCCAATGATGATGAGATGACAAGAGATTTTTTGAGTCTTGGTGCATTTTCTCAAAGAGACTTGTTCAATATATCTGGAATTGATGGCCCTTTGAGTTTGCATGGTAAGCAAAATCAAATTCAAAATCAAACTCCTTGGTGA 1359 0.3841 MMKGLSVDENMSNLTSASSEISASSATKNGKASTNLEPQPKRKRNLPGHPDPEAQVLALSPQTLLATNRFICEICNKGFQRDQNLQLHKRGHNLPWKLKKRNVNEIIRKKVYVCPEPTCVHHDPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKRYAVQSDWKAHSKICGTKEYKCDCGTLFSRRDSFITHRAFCDVLSQESASISAVNPLFSSHSQFHQSHGFQPLSLKKEQDFNLRPEIPLWLLPTHLNHFQNPNPTTLFPNNSFNSNNITTASPHMSATALLQKASQIGVTTVSKTEPCRPHLMQTHVPSEMVMPSREEIGTTGFSHCLASYGNKAAITSDCFEESSSLLHDVMYGSESSHSQFEAVTAAMSMRGMFDTQRDNNNFEEQYSQFGKSNIIKNGGANDDEMTRDFLSLGAFSQRDLFNISGIDGPLSLHGKQNQIQNQTPW 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00445 452 Pfam Zinc-finger double-stranded RNA-binding 70 92 IPR022755 -
Mepo4g00445 452 ProSitePatterns Zinc finger C2H2 type domain signature. 72 92 IPR013087 -
Mepo4g00445 452 SMART c2h2final6 112 142 IPR013087 -
Mepo4g00445 452 SMART c2h2final6 70 92 IPR013087 -
Mepo4g00445 452 SMART c2h2final6 147 167 IPR013087 -
Mepo4g00445 452 MobiDBLite consensus disorder prediction 16 54 - -
Mepo4g00445 452 Gene3D Classic Zinc Finger 125 204 - -
Mepo4g00445 452 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Mepo4g00445 452 MobiDBLite consensus disorder prediction 16 40 - -
Mepo4g00445 452 Gene3D Classic Zinc Finger 66 93 - -
Mepo4g00445 452 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 21 426 IPR031140 -
Mepo4g00445 452 SUPERFAMILY beta-beta-alpha zinc fingers 69 167 IPR036236 -
Mepo4g00445 452 ProSiteProfiles Zinc finger C2H2 type domain profile. 70 92 IPR013087 -
Mepo4g00445 452 FunFam protein indeterminate-domain 12-like 49 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00445 Mepo-Chr4 6340626 6343850 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00445 7 294 IDZ Gene Family AT1G55110 60.062 2.36e-120 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mepo4g00445 zf-C2H2_jaz 4.5e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00445 K25870 - vvi:100257789 471.085