Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00431 ATGACTCCTGTTTCTCTGAATCCACCAGGTCCTAATTCCTTACTACAAGGTCAAAACCAATTCTTCAATATTTCTCCTGTTAATCAGGACACTCCTACCTTCTTTAACTTACTTGGTGACTTTGGAGAAAATCATGATCATCATCAGCATCAGGATCATAGGCTGGCATTTCAACACGATGGATCATCATCAAGCAATCATCAACAACTCTATAATTCATCAAGTGAGTCAGTTATGGTTGATTCAAGCAGTGCACGTGACACAAATTTATCATCATCCTTGGAGCTGGAAGATAGCAGCAAAAAAAACAGTCACGGGTGTGAGAAATGGATGTCTTCAAAGATGAGGTTGATGAATAAGATGATCAACACAACTGCTACTGTTGCCACAACTCCAATAATGAGACCAAACAACAGTATTGCAACCACTACTGACAAAGCTATCAAGACAACAACTCCAATGATGAGTCCTAGTAATTATGGCACTAGTCCAAGAAATCAAAATATAAGGTACAGCCAAACAAGCCCTAGTAGTAACAGCGGTAACAACACCGTTAGGGTTTGTTCTGATTGTAGTACATCCCATACCCCACTTTGGAGGAGTGGCCCTATGGGTCCTAAGTCACTTTGCAATGCTTGTGGAATCAGGCAGAGAAAGGCAAGAAGGGCCATGGCTGAAGCTGCCAATGGTTTGGCTACATCTCCTAAAACTAAAGTGCTTAAGATAAAGAAGCCTACACAATTCAAGACTAAGAACAAGGCTTCTACTAGTACCTCTACAACTTCAACTACTTCTGCTGGCTCATCATCTCAAGATGTGAAGAAACTTGACTCTTTTGCATTAGATTATGATTATGATGAAGCAGCTACAGCGGCACGACTTCTGGTGGATATATCTTCTGGTGTTACTTACTGA 915 0.4087 MTPVSLNPPGPNSLLQGQNQFFNISPVNQDTPTFFNLLGDFGENHDHHQHQDHRLAFQHDGSSSSNHQQLYNSSSESVMVDSSSARDTNLSSSLELEDSSKKNSHGCEKWMSSKMRLMNKMINTTATVATTPIMRPNNSIATTTDKAIKTTTPMMSPSNYGTSPRNQNIRYSQTSPSSNSGNNTVRVCSDCSTSHTPLWRSGPMGPKSLCNACGIRQRKARRAMAEAANGLATSPKTKVLKIKKPTQFKTKNKASTSTSTTSTTSAGSSSQDVKKLDSFALDYDYDEAATAARLLVDISSGVTY 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00431 304 MobiDBLite consensus disorder prediction 58 97 - -
Mepo4g00431 304 Pfam GATA zinc finger 188 221 IPR000679 GO:0006355|GO:0043565
Mepo4g00431 304 MobiDBLite consensus disorder prediction 243 270 - -
Mepo4g00431 304 MobiDBLite consensus disorder prediction 58 107 - -
Mepo4g00431 304 CDD ZnF_GATA 187 245 IPR000679 GO:0006355|GO:0043565
Mepo4g00431 304 MobiDBLite consensus disorder prediction 249 270 - -
Mepo4g00431 304 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 182 222 - -
Mepo4g00431 304 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 40 301 - -
Mepo4g00431 304 Gene3D - 183 265 IPR013088 GO:0006355|GO:0008270
Mepo4g00431 304 SMART GATA_3 182 233 IPR000679 GO:0006355|GO:0043565
Mepo4g00431 304 ProSitePatterns GATA-type zinc finger domain. 188 213 IPR000679 GO:0006355|GO:0043565
Mepo4g00431 304 MobiDBLite consensus disorder prediction 150 183 - -
Mepo4g00431 304 ProSiteProfiles GATA-type zinc finger domain profile. 182 218 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00431 Mepo-Chr4 6240411 6242860 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00431 108 219 C2C2-Gata Transcription Factor Family AT5G56860 40.000 4.14e-18 82.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo4g00431 GATA 2.8e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00431 - - mtr:11422443 565.459