Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00430 ATGAAAAAAACAACTGCTACCACCACATATCCAAAGGCTAGAGTATTTAACACCATTCCAGCTGCTACAACCACTAGACGAGTTTGTTCACATTGTGAAACAACCAAGACTCCCCTTTGGAGGAGTGGTCCTATGGGCCCTAAGTCGTTGTGCAACGCGTGTGGCCTTAAACAGAGAAGGGGAATGGCAAAAGCTGCTAAAGGTTCAGATACACAAAAGGAAAAGGGCAATGGTGAAAACTCATCATTTGAGGATGTGAAGAAGCTTTAA 270 0.437 MKKTTATTTYPKARVFNTIPAATTTRRVCSHCETTKTPLWRSGPMGPKSLCNACGLKQRRGMAKAAKGSDTQKEKGNGENSSFEDVKKL 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00430 89 MobiDBLite consensus disorder prediction 63 89 - -
Mepo4g00430 89 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 22 60 - -
Mepo4g00430 89 ProSitePatterns GATA-type zinc finger domain. 29 54 IPR000679 GO:0006355|GO:0043565
Mepo4g00430 89 MobiDBLite consensus disorder prediction 62 89 - -
Mepo4g00430 89 ProSiteProfiles GATA-type zinc finger domain profile. 23 59 IPR000679 GO:0006355|GO:0043565
Mepo4g00430 89 Gene3D - 24 86 IPR013088 GO:0006355|GO:0008270
Mepo4g00430 89 CDD ZnF_GATA 28 59 IPR000679 GO:0006355|GO:0043565
Mepo4g00430 89 Pfam GATA zinc finger 29 60 IPR000679 GO:0006355|GO:0043565
Mepo4g00430 89 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 20 73 - -
Mepo4g00430 89 SMART GATA_3 23 74 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00430 Mepo-Chr4 6227936 6228359 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00430 2 60 C2C2-Gata Transcription Factor Family AT5G56860 57.377 8.63e-17 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo4g00430 GATA 1.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00430 - - ccav:112517089 78.1814