Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00427 ATGAGAGTAAGTAACGATGATCCAGTTCCAGCCACAAAGAAGAAAAAAACTACTGCTAGAGCTGCTAAAAAGAAGAAATCAGCTGCTAGTGCTGCCAAAAAGAAAATAAAAACTACTACCGAATACGAATACCCAAAAGGGCAATGGCGAGTAATATATCCAACTAGGGTTTGTTTCAATTGCAATACAAACACTACTCCTCTTTGGAGGAGTGATCCTACAGGTTCCAAGTCGTTGTGCAATGCATGTGGACTCCGACGAAGAAGGGAAGAGGCAAAAGCCGATAAGGGTCTTGATACTCATAAGGAAAAGGGCAATGGCGAAAGCTCATCATCTGAGGATGTGAAGAATGTTTTAATGTTCTGCTGA 369 0.4146 MRVSNDDPVPATKKKKTTARAAKKKKSAASAAKKKIKTTTEYEYPKGQWRVIYPTRVCFNCNTNTTPLWRSDPTGSKSLCNACGLRRRREEAKADKGLDTHKEKGNGESSSSEDVKNVLMFC 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00427 122 ProSitePatterns GATA-type zinc finger domain. 58 83 IPR000679 GO:0006355|GO:0043565
Mepo4g00427 122 ProSiteProfiles GATA-type zinc finger domain profile. 52 88 IPR000679 GO:0006355|GO:0043565
Mepo4g00427 122 MobiDBLite consensus disorder prediction 1 37 - -
Mepo4g00427 122 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 55 92 - -
Mepo4g00427 122 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 10 96 - -
Mepo4g00427 122 MobiDBLite consensus disorder prediction 90 117 - -
Mepo4g00427 122 SMART GATA_3 54 107 IPR000679 GO:0006355|GO:0043565
Mepo4g00427 122 CDD ZnF_GATA 57 88 IPR000679 GO:0006355|GO:0043565
Mepo4g00427 122 Gene3D - 53 118 IPR013088 GO:0006355|GO:0008270
Mepo4g00427 122 MobiDBLite consensus disorder prediction 16 32 - -
Mepo4g00427 122 MobiDBLite consensus disorder prediction 90 110 - -
Mepo4g00427 122 Pfam GATA zinc finger 58 90 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00427 Mepo-Chr4 6214940 6215401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00427 25 89 C2C2-Gata Transcription Factor Family AT5G56860 44.615 1.97e-12 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mepo4g00427 GATA 1.3e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00427 - - sly:101268354 68.5514