Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mepo4g00409 ATGGAGAATGATGTGTACGCTGCTCAAATGAACATGGCTGGTCAAGTTTCAAGTATAGAAGATATCACACAACATCTAACACAAAAGCCATTCATTCATTGCTATTCATTTGACCTTAACAACCAAAACAACATCATAAATGGAATTCCAATACTTTCTGGTGGAGAACAAGATCAACATGTTGATGGTAGTTTCATGAATCAAGTTACAATAGCTGATAATTCATTTGTTACATCACAACAAGGAAGGACTATTGTGGAAAATCCCTCAAATCTCATTGTTAATAACAATGACTTTTCAGTTCCTGCTAGAATTGGTCTTCAAGAAAATTTAGAAGCAATAGTTCCATACATATTCAATAATTGGCATGATACTTCAAACTCAAACTCAAACCCTTTGTGTGCAACTTTTGGTGATAATAATAGCTATGTTAACAAGTTTTTGAAAGCTCAAGAGAGTAATGTTGGAACTGAATTCATGTCATATTCTCCGATAGGGAACATCGATCCAAATGGATGGCAATCGTCAAATGTTGCTAACTTAACAAATCTTGCTTATAGTTCCTCAAATTGTAGCAATGAACTTTCACTAAGTCTTGCAACATCTCCAACTTCAGGTCAATGCTCAGAGATTAGTTGTTCTGACTTAACTCATAGCATGAATGGAACAAGATCCGGTTTGGAACAGGCCTCATGTAGTAGTATGGAACTTTCTATGAGTTTAGGGAATGATAAACATGTCAAATTTTCGCCCGCAATATTAGGATCAAGATACCTTGCTGTAATTCAGGAAATACTTGTTCAAATTGCAACATTTTCATTTGAAAATCTTGATGAGATAAACTATTCGGGTTCTGGTGTTAGAGGCCGAGGAAATAAATCAACTTCGTTGAACACAACCAAGCGAAGAATAGGAATAAATTGCGACGAGAGTCCTATGTCAGAAGCTTATGCTGATTCTTCATTGCAAAGGCATGCTGTTGAATCAAAGAAATCTCAACTCTTGATGCTTCTACAGATGGTGGACAGTCAATATAGTCAATGTTTGGATGAGATTCACACTGTTGTATCTGCATTTCATGCTGCTACTGAGCTCGATCCACATATACATGCACACTTCGCTGTCAAAACGGTTTCTCGACTATATAAGGACTTGAGAGAGAGGATTAGCAAACATATTCTTTCCATGGGATCAAATTTTAACAGTTCATGGTCAGAAGAGAATAAGGAATTGTCTGTTGAAACTTCGTTCATTCAAAAGCAATGGGCTCTTCAACAGTTGAAAAGGAAAGATCAGTTATGGAGGCCCCAAAGGGGCTTGCCAGAAAGATCTGTTTCTGTTCTACGTGATTGGATGTTTCAGAATTTCCTCCATCCGTATCCTAAAGATGCAGAGAAGCATTTACTTGCAATAAAAAGTGGGTTGTCTAGAAGTCAGGTATCAAACTGGTTTATAAATGCGCGTGTTCGGCTATGGAAACCATTGATTGAGGAAATGTATGCTGAAATGAATAGAAGAAAAGCTTGTCGAAATGAAGGAGAAAATGAGAGCAGTGAAAGAAGCAGGATAAGCATTAACAATCAAATGTTTAATATGAATTGA 1602 0.3677 MENDVYAAQMNMAGQVSSIEDITQHLTQKPFIHCYSFDLNNQNNIINGIPILSGGEQDQHVDGSFMNQVTIADNSFVTSQQGRTIVENPSNLIVNNNDFSVPARIGLQENLEAIVPYIFNNWHDTSNSNSNPLCATFGDNNSYVNKFLKAQESNVGTEFMSYSPIGNIDPNGWQSSNVANLTNLAYSSSNCSNELSLSLATSPTSGQCSEISCSDLTHSMNGTRSGLEQASCSSMELSMSLGNDKHVKFSPAILGSRYLAVIQEILVQIATFSFENLDEINYSGSGVRGRGNKSTSLNTTKRRIGINCDESPMSEAYADSSLQRHAVESKKSQLLMLLQMVDSQYSQCLDEIHTVVSAFHAATELDPHIHAHFAVKTVSRLYKDLRERISKHILSMGSNFNSSWSEENKELSVETSFIQKQWALQQLKRKDQLWRPQRGLPERSVSVLRDWMFQNFLHPYPKDAEKHLLAIKSGLSRSQVSNWFINARVRLWKPLIEEMYAEMNRRKACRNEGENESSERSRISINNQMFNMN 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mepo4g00409 533 ProSiteProfiles 'Homeobox' domain profile. 431 494 IPR001356 GO:0003677
Mepo4g00409 533 SMART HOX_1 434 498 IPR001356 GO:0003677
Mepo4g00409 533 Pfam Homeobox KN domain 451 490 IPR008422 GO:0003677|GO:0006355
Mepo4g00409 533 Gene3D - 429 509 - -
Mepo4g00409 533 Pfam Associated with HOX 253 390 IPR006563 -
Mepo4g00409 533 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 198 517 - -
Mepo4g00409 533 SUPERFAMILY Homeodomain-like 436 503 IPR009057 -
Mepo4g00409 533 MobiDBLite consensus disorder prediction 510 533 - -
Mepo4g00409 533 CDD homeodomain 434 494 IPR001356 GO:0003677
Mepo4g00409 533 SMART prehox3 247 391 IPR006563 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mepo4g00409 Mepo-Chr4 6041544 6044363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mepo4g00409 193 507 Homeobox Transcription Factor Family AT4G32980 58.491 1.19e-109 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Mepo4g00409 POX 5.6e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mepo4g00409 - - gmx:100812648 670.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mepo4g00409 4 6041544 6044363 Mepo4g00409 4 6041544 6044363 ECH